| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is pucG [H]
Identifier: 116688851
GI number: 116688851
Start: 928736
End: 929947
Strand: Direct
Name: pucG [H]
Synonym: Bcen2424_0828
Alternate gene names: 116688851
Gene position: 928736-929947 (Clockwise)
Preceding gene: 116688844
Following gene: 116688853
Centisome position: 26.66
GC content: 68.15
Gene sequence:
>1212_bases ATGTCCATCGATTACTCGCCGATTCCCTGTCCCGTCGTCGTGCCGCTCGACGCGATCCTGCCCGAAGAACCGCTGCTGAT GATGGGGGCCGGCCCGGTTCCGATCCCGGCCGCGGTGGCCAAGGCGAACACGATCGTGATCAACCACCTCGGCGCGACGA TGGCGAAGATCATCGAGCAGGTGAAGGAGATGGCGCGTTACGTGTTCCAGACCCGCACGAAGTGGGTGCTCGGCGTCGCG GGCCCGGGCTCGGCCGCGATGGAAATGGCGATCTCGAACCTCGCATGGCGCGGCACGCGCGTGCTGTCGATCCGCAACGG CTTCTTCAGCGCGCGGATGGCCGAGATGGCCACGCGTGTCGGCGCCGACGTCGCGACGCTCGAAGTGGCCGATCGCGCGG TGGCGAGCCTCGACGAGATTGCCGACGCGATCGCGCGCGAGCGGCCCGAGATCGTCACGATCGTGCAGGGCGAGACGTCG AACACCGTGTGGAACCGCGACCTGCGCGACATCGCGGCGCTCGCGAAGGCGGCCGGCGCGCTGGTCGTCGTCGACGCGGT GTGCACGCTGTCGACGATGCCGCTCGAGATGGACGCGTGGGGCATCGACGCGGTGATCACCGGCGGCCAGAAGGGGCTGT CGTCGATCCCGGGCGTGTCGCTGATCGCGTTCTCCGATGCCGCGTGGGAGCGTATGAAGACGCGCCCCGAGCCGAACGCG CACTGGTGTCTCGACATGGCGCTCGCGGAGAATTTCTGGCACAACGCCGGCTATCACTACACGGCGCCCGTGTCGGGTGT GCTCGCGCTGCACGAGGCGCTGCGGCTCGTCTGCGCGGAAACGCTCGAAAGCCGCTTCGCGCGCCACCTGCGCTGCTCGC TGGCGCTGCAGGCAGGCGTCGAATCGATGGGGCTCAAGCTCTATGCGCCGAAGGACTGCCGGCTCAATTCGGTGGTCGGG ATTGAAACGCCGGAGGGGCTGACGCCCGGGATGGTCTGCGGCCATATCTCGAAGCAGTACCAGGTCGAGATCTCGGGTTC GTTCGGGTTGCCGATCGTGCGGATCGGGCAGATGGGCGAGCAGTGCCGCGAACACAACCTGTTCCGCACGCTGCATGCGT TCGGCCGCACGATGGTCGACCTGAAGGTGCCGGTCGACCTGCCGGCCGGCGTCGCGGCGCTCGAACAGGAACTGTCGCGG CGCGGCGCGTAA
Upstream 100 bases:
>100_bases CACGGAATGATCGATCAGTTCGCCGCGTGCAACGGGCGCCGCGCCACGGGCCCCGTGCTGCGGGCGTTCGAGCACTTCCT TTCCTCATCCTTTTCCAGCC
Downstream 100 bases:
>100_bases GCGCGGAACAGCGGAAAGGGGCCGCGCTCAGCGGCCTTGCATCGCGCGCCGATACGTATTCGGCGTCGTGCCGTGCGCGT CGCGAAAGCGATGGCTGAAG
Product: aminotransferase, class V
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MSIDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANTIVINHLGATMAKIIEQVKEMARYVFQTRTKWVLGVA GPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRVGADVATLEVADRAVASLDEIADAIARERPEIVTIVQGETS NTVWNRDLRDIAALAKAAGALVVVDAVCTLSTMPLEMDAWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKTRPEPNA HWCLDMALAENFWHNAGYHYTAPVSGVLALHEALRLVCAETLESRFARHLRCSLALQAGVESMGLKLYAPKDCRLNSVVG IETPEGLTPGMVCGHISKQYQVEISGSFGLPIVRIGQMGEQCREHNLFRTLHAFGRTMVDLKVPVDLPAGVAALEQELSR RGA
Sequences:
>Translated_403_residues MSIDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANTIVINHLGATMAKIIEQVKEMARYVFQTRTKWVLGVA GPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRVGADVATLEVADRAVASLDEIADAIARERPEIVTIVQGETS NTVWNRDLRDIAALAKAAGALVVVDAVCTLSTMPLEMDAWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKTRPEPNA HWCLDMALAENFWHNAGYHYTAPVSGVLALHEALRLVCAETLESRFARHLRCSLALQAGVESMGLKLYAPKDCRLNSVVG IETPEGLTPGMVCGHISKQYQVEISGSFGLPIVRIGQMGEQCREHNLFRTLHAFGRTMVDLKVPVDLPAGVAALEQELSR RGA >Mature_402_residues SIDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANTIVINHLGATMAKIIEQVKEMARYVFQTRTKWVLGVAG PGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRVGADVATLEVADRAVASLDEIADAIARERPEIVTIVQGETSN TVWNRDLRDIAALAKAAGALVVVDAVCTLSTMPLEMDAWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKTRPEPNAH WCLDMALAENFWHNAGYHYTAPVSGVLALHEALRLVCAETLESRFARHLRCSLALQAGVESMGLKLYAPKDCRLNSVVGI ETPEGLTPGMVCGHISKQYQVEISGSFGLPIVRIGQMGEQCREHNLFRTLHAFGRTMVDLKVPVDLPAGVAALEQELSRR GA
Specific function: Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities [H]
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=378, Percent_Identity=30.4232804232804, Blast_Score=175, Evalue=6e-44, Organism=Caenorhabditis elegans, GI17536281, Length=355, Percent_Identity=29.5774647887324, Blast_Score=159, Evalue=2e-39, Organism=Saccharomyces cerevisiae, GI6321079, Length=365, Percent_Identity=25.7534246575342, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI17530823, Length=363, Percent_Identity=31.9559228650138, Blast_Score=183, Evalue=2e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: NA
Molecular weight: Translated: 43330; Mature: 43199
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANTIVINHLGATMAKIIEQ CCCCCCCCCCCEEECHHHHCCCCCEEEECCCCCCCCHHHHCCCEEEEEHHHHHHHHHHHH VKEMARYVFQTRTKWVLGVAGPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRV HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHH GADVATLEVADRAVASLDEIADAIARERPEIVTIVQGETSNTVWNRDLRDIAALAKAAGA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC LVVVDAVCTLSTMPLEMDAWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKTRPEPNA EEEEEHHHHHCCCCEEECCCCCCEEEECCCCCHHCCCCCEEEEECHHHHHHHHCCCCCCC HWCLDMALAENFWHNAGYHYTAPVSGVLALHEALRLVCAETLESRFARHLRCSLALQAGV HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH ESMGLKLYAPKDCRLNSVVGIETPEGLTPGMVCGHISKQYQVEISGSFGLPIVRIGQMGE HHCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHH QCREHNLFRTLHAFGRTMVDLKVPVDLPAGVAALEQELSRRGA HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SIDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANTIVINHLGATMAKIIEQ CCCCCCCCCCEEECHHHHCCCCCEEEECCCCCCCCHHHHCCCEEEEEHHHHHHHHHHHH VKEMARYVFQTRTKWVLGVAGPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRV HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHH GADVATLEVADRAVASLDEIADAIARERPEIVTIVQGETSNTVWNRDLRDIAALAKAAGA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC LVVVDAVCTLSTMPLEMDAWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKTRPEPNA EEEEEHHHHHCCCCEEECCCCCCEEEECCCCCHHCCCCCEEEEECHHHHHHHHCCCCCCC HWCLDMALAENFWHNAGYHYTAPVSGVLALHEALRLVCAETLESRFARHLRCSLALQAGV HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH ESMGLKLYAPKDCRLNSVVGIETPEGLTPGMVCGHISKQYQVEISGSFGLPIVRIGQMGE HHCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHH QCREHNLFRTLHAFGRTMVDLKVPVDLPAGVAALEQELSRRGA HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]