| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is dps [C]
Identifier: 116688751
GI number: 116688751
Start: 812306
End: 812794
Strand: Direct
Name: dps [C]
Synonym: Bcen2424_0728
Alternate gene names: 116688751
Gene position: 812306-812794 (Clockwise)
Preceding gene: 116688750
Following gene: 116688752
Centisome position: 23.32
GC content: 64.01
Gene sequence:
>489_bases ATGGCCAAGAAAGGCAACGCCACGCAGATCAACATCGGTATCAGCGACAAGGACCGCAAGAACATCGCGGACGGCCTGTC GCGCCTGCTCGCCGATACCTTTTCGCTGTACCTGAAGACCCACAATTTCCACTGGAACGTGACCGGACCGATGTTCAACA CGCTGCACCTGATGTTCGAGGAGCAGTACAACGAACTGTGGCTCGCGGTCGATTCCGTCGCCGAGCGCATTCGCACGCTG GGCGTCGTCGCGCCCGGCACGTTCGGCGAGTTCGCGAAACTGTCGTCGGTGCCGGAAGCGAAGGGCGTGCCGGCCGCCGA GGAGATGATCCGCCAGCTCGTCGAAGGGCACGAGACCGTGGTGCGCACCGCGCGCGAAATCTTCCCGATCGCCGACGCGG CGAGCGACGAGCCGACCGCCGACCTGCTCACGCAGCGCCTGCAGACGCATGAAAAGACCGCATGGATGCTGCGGTCGCTG CTCGCGTAA
Upstream 100 bases:
>100_bases CGCTAGACTGGCGAGTCGCGAACGGATGTCGCGCGACGCGGCATGCGGATTGCTCGACGCATTTTCGCCGGTTCAACATT TCGAATGAGGAGTCCCGAAG
Downstream 100 bases:
>100_bases GCCCGGTGCGGCCGGGGACCGGAAGGCGGACCGCTCCGGGTGGGCTTTGAATCTGGCCCCTGATTGATGCGCGCCGCTGC CGGCCGTGCGCAGCGGGCTG
Product: Ferritin, Dps family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MAKKGNATQINIGISDKDRKNIADGLSRLLADTFSLYLKTHNFHWNVTGPMFNTLHLMFEEQYNELWLAVDSVAERIRTL GVVAPGTFGEFAKLSSVPEAKGVPAAEEMIRQLVEGHETVVRTAREIFPIADAASDEPTADLLTQRLQTHEKTAWMLRSL LA
Sequences:
>Translated_162_residues MAKKGNATQINIGISDKDRKNIADGLSRLLADTFSLYLKTHNFHWNVTGPMFNTLHLMFEEQYNELWLAVDSVAERIRTL GVVAPGTFGEFAKLSSVPEAKGVPAAEEMIRQLVEGHETVVRTAREIFPIADAASDEPTADLLTQRLQTHEKTAWMLRSL LA >Mature_161_residues AKKGNATQINIGISDKDRKNIADGLSRLLADTFSLYLKTHNFHWNVTGPMFNTLHLMFEEQYNELWLAVDSVAERIRTLG VVAPGTFGEFAKLSSVPEAKGVPAAEEMIRQLVEGHETVVRTAREIFPIADAASDEPTADLLTQRLQTHEKTAWMLRSLL A
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 18065; Mature: 17934
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00818 DPS_1 ; PS00819 DPS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKGNATQINIGISDKDRKNIADGLSRLLADTFSLYLKTHNFHWNVTGPMFNTLHLMFE CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH EQYNELWLAVDSVAERIRTLGVVAPGTFGEFAKLSSVPEAKGVPAAEEMIRQLVEGHETV HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH VRTAREIFPIADAASDEPTADLLTQRLQTHEKTAWMLRSLLA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure AKKGNATQINIGISDKDRKNIADGLSRLLADTFSLYLKTHNFHWNVTGPMFNTLHLMFE CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH EQYNELWLAVDSVAERIRTLGVVAPGTFGEFAKLSSVPEAKGVPAAEEMIRQLVEGHETV HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH VRTAREIFPIADAASDEPTADLLTQRLQTHEKTAWMLRSLLA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]