| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688510
Identifier: 116688510
GI number: 116688510
Start: 545063
End: 545908
Strand: Reverse
Name: 116688510
Synonym: Bcen2424_0486
Alternate gene names: NA
Gene position: 545908-545063 (Counterclockwise)
Preceding gene: 116688513
Following gene: 116688509
Centisome position: 15.67
GC content: 60.76
Gene sequence:
>846_bases TTGATTGCCGTCGCACTCGTCGCCTATTTCACCCTCGCCGTCGCCGTTGCGGCACTGTTGCTTTTACCGGGTATCCGCGC GACCGTTTTCGAATCCGTGGCCCAGTTTCACGGCCGTCTGACGCGCCGTGCGAACGAGCGCGCCGCACGCACGCGCAGTC AAATTGTTAAATCGGCAACCGTGACGCGCGGCGCATTAAGCGACGTGCAAAATTTACTGGTTCGGCGGCGCTTGATGATT ATGGTGTCGGCAGGTATTCTTGCGACGCCGCCATTGGTGGCCATTGCGTTACGCGGTCGGCAATTATTTCAGTACGACGA CACGGCGCGCGTGCCCGACGAGAAGATCGCCGCGCTGTTGCAGGGCGAACAACTCGTGCCGCCGCCGCCGTTGCCGCCGG AAGTCTTTGCCACGAAGGAAGTCGAACAGATCCGCCCGGCGCTCAAGGATGCAAGCCGCGACTGGAACCTGCTGGACCCG GATTTCCGTACGCGTTTGCTGCTGGTCTACAAGATCATGCACGAACAACATGGCTATGAAATGGCGCTGCTGGAAGGCTA CCGGAGCCCGGAACGACAGAACCGGCTCGCGCAGATGGGCACGAACGTGACCAATGCCGCGGCCTTCCAGAGTTATCACC AGTTCGGGTTGGCGGCCGACAACGCATTCCTGCGCGACGGCAAGCTGGTCATTTCCGAGAAAGATCCGTGGGCGATGCGC GGCTACCAGTTGTACGGCCAGGTCGCCGAGCAAGTCGGCCTGACCTGGGGCGGCCGATGGAAAATGATGGATCTCGGGCA CGTGGAATACCATAAACCCGGTTTTAAACTGGGACGCGGCAGCTAG
Upstream 100 bases:
>100_bases GTTTAATTCACCGCGATAATATAGCCCGGCCTCTCGAAGCAGCCTGATTCTAAGAGCAAGCATTGCAAAACACAATCAAT TCCAATTTCCGGGGATTTCT
Downstream 100 bases:
>100_bases TCAGGGCTGCCGGACAAGAAATAATGAGGGCGGCATGGGGCTTTTTAATCACCCGGCAGGAAACGATTTGGGCGGCGCAA ACAATCGGGCATTCCGGTGC
Product: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
Products: NA
Alternate protein names: D-Alanyl-D-Alanine Carboxypeptidase Family; LysM Domain-Containing Protein; Subfamily; D-Alanyl-D-Alanine Carboxypeptidase Family Protein; Transmembrane Protein
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MIAVALVAYFTLAVAVAALLLLPGIRATVFESVAQFHGRLTRRANERAARTRSQIVKSATVTRGALSDVQNLLVRRRLMI MVSAGILATPPLVAIALRGRQLFQYDDTARVPDEKIAALLQGEQLVPPPPLPPEVFATKEVEQIRPALKDASRDWNLLDP DFRTRLLLVYKIMHEQHGYEMALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADNAFLRDGKLVISEKDPWAMR GYQLYGQVAEQVGLTWGGRWKMMDLGHVEYHKPGFKLGRGS
Sequences:
>Translated_281_residues MIAVALVAYFTLAVAVAALLLLPGIRATVFESVAQFHGRLTRRANERAARTRSQIVKSATVTRGALSDVQNLLVRRRLMI MVSAGILATPPLVAIALRGRQLFQYDDTARVPDEKIAALLQGEQLVPPPPLPPEVFATKEVEQIRPALKDASRDWNLLDP DFRTRLLLVYKIMHEQHGYEMALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADNAFLRDGKLVISEKDPWAMR GYQLYGQVAEQVGLTWGGRWKMMDLGHVEYHKPGFKLGRGS >Mature_281_residues MIAVALVAYFTLAVAVAALLLLPGIRATVFESVAQFHGRLTRRANERAARTRSQIVKSATVTRGALSDVQNLLVRRRLMI MVSAGILATPPLVAIALRGRQLFQYDDTARVPDEKIAALLQGEQLVPPPPLPPEVFATKEVEQIRPALKDASRDWNLLDP DFRTRLLLVYKIMHEQHGYEMALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADNAFLRDGKLVISEKDPWAMR GYQLYGQVAEQVGLTWGGRWKMMDLGHVEYHKPGFKLGRGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31404; Mature: 31404
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAVALVAYFTLAVAVAALLLLPGIRATVFESVAQFHGRLTRRANERAARTRSQIVKSAT CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTRGALSDVQNLLVRRRLMIMVSAGILATPPLVAIALRGRQLFQYDDTARVPDEKIAALL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHEECCCCCCCCHHHHHHHH QGEQLVPPPPLPPEVFATKEVEQIRPALKDASRDWNLLDPDFRTRLLLVYKIMHEQHGYE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE MALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADNAFLRDGKLVISEKDPWAMR EHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCHHH GYQLYGQVAEQVGLTWGGRWKMMDLGHVEYHKPGFKLGRGS HHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCC >Mature Secondary Structure MIAVALVAYFTLAVAVAALLLLPGIRATVFESVAQFHGRLTRRANERAARTRSQIVKSAT CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTRGALSDVQNLLVRRRLMIMVSAGILATPPLVAIALRGRQLFQYDDTARVPDEKIAALL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHEECCCCCCCCHHHHHHHH QGEQLVPPPPLPPEVFATKEVEQIRPALKDASRDWNLLDPDFRTRLLLVYKIMHEQHGYE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE MALLEGYRSPERQNRLAQMGTNVTNAAAFQSYHQFGLAADNAFLRDGKLVISEKDPWAMR EHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCHHH GYQLYGQVAEQVGLTWGGRWKMMDLGHVEYHKPGFKLGRGS HHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA