| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688475
Identifier: 116688475
GI number: 116688475
Start: 496114
End: 496842
Strand: Reverse
Name: 116688475
Synonym: Bcen2424_0451
Alternate gene names: NA
Gene position: 496842-496114 (Counterclockwise)
Preceding gene: 116688482
Following gene: 116688463
Centisome position: 14.26
GC content: 56.93
Gene sequence:
>729_bases ATGAGCATGGTCGTAATCAAAGACCGTGCGGCGCTCATGCAGCGCCTCATGGATGCGGTCATTCAGGGCTATCACAGCTA TACATTCGGCACCGTCAAAACAGAGCGTGTACACGCTCTCTGCGAAAAATTCTCTGACCGTTATCTGGTTGCGTTGAATC GCAACCAGCTTGCCTATCGACGTGCGAAAGGCTTTGGGAATGCGCGGCTGATACTCGCAGATCTCGGCGATCCAAATGGC CTGCATTGGTGGCTACTAGTCACGGATGGAGCGCACCCAGCTCGAGAAAGGGAGAAAGGCTCACGAAAAACGCGCGAGGA CCTGAAAGATGCGCTGAAGCCTGGGGAGCGCATCCATGTCTCCGGTTACGAATTGCTGAAGATGGCGCACTCGAAGGCTG TCGGCGGCGGCGTTCGCTTGACGTGGCGCATGACGGATGAAACCAAACGGCAGTGGCGTTATCAGATCCGCGTTGCGGTT CGCGCCCGACACGCGGATGATGCAGTAGCCCGAGTTACGCGGCTGATGTACAAGGCTCCGCGCTTCGATTCCATCAAGGC CCAGGTCGATAAACTTACGGATTTTCTACGTGCAGAGTGGGACAGAACTGGGCACGATGTGCAGCTTCTGAGCATTCCTG CGGCGCTAAAACCCATTCCCCGTGTCGCAAGCGACGGGATACCGGTAGCCGAATGGATCGCCGCGCAGATGCCAGAACAA GCGGCTTGA
Upstream 100 bases:
>100_bases ATCTCTTATAATTAGCAATCAATCGATAACGCAGAAAATTCCCGTAAAGCCTTATCCAGCAAGGCTTTGACTTGCTGCTG AATCAATTGCCGGAGAGGAC
Downstream 100 bases:
>100_bases CGAAGGTGAAAAATGAACGCCGGAACGGTTTCCAACCTGATTTCCTGTGGCATCCTGATCGCGGGTCTCGCGTTCGCTTT CTGGTTCACGGTGGTGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSMVVIKDRAALMQRLMDAVIQGYHSYTFGTVKTERVHALCEKFSDRYLVALNRNQLAYRRAKGFGNARLILADLGDPNG LHWWLLVTDGAHPAREREKGSRKTREDLKDALKPGERIHVSGYELLKMAHSKAVGGGVRLTWRMTDETKRQWRYQIRVAV RARHADDAVARVTRLMYKAPRFDSIKAQVDKLTDFLRAEWDRTGHDVQLLSIPAALKPIPRVASDGIPVAEWIAAQMPEQ AA
Sequences:
>Translated_242_residues MSMVVIKDRAALMQRLMDAVIQGYHSYTFGTVKTERVHALCEKFSDRYLVALNRNQLAYRRAKGFGNARLILADLGDPNG LHWWLLVTDGAHPAREREKGSRKTREDLKDALKPGERIHVSGYELLKMAHSKAVGGGVRLTWRMTDETKRQWRYQIRVAV RARHADDAVARVTRLMYKAPRFDSIKAQVDKLTDFLRAEWDRTGHDVQLLSIPAALKPIPRVASDGIPVAEWIAAQMPEQ AA >Mature_241_residues SMVVIKDRAALMQRLMDAVIQGYHSYTFGTVKTERVHALCEKFSDRYLVALNRNQLAYRRAKGFGNARLILADLGDPNGL HWWLLVTDGAHPAREREKGSRKTREDLKDALKPGERIHVSGYELLKMAHSKAVGGGVRLTWRMTDETKRQWRYQIRVAVR ARHADDAVARVTRLMYKAPRFDSIKAQVDKLTDFLRAEWDRTGHDVQLLSIPAALKPIPRVASDGIPVAEWIAAQMPEQA A
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27510; Mature: 27379
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMVVIKDRAALMQRLMDAVIQGYHSYTFGTVKTERVHALCEKFSDRYLVALNRNQLAYR CCEEEECCHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHH RAKGFGNARLILADLGDPNGLHWWLLVTDGAHPAREREKGSRKTREDLKDALKPGERIHV HHCCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCCCEEEE SGYELLKMAHSKAVGGGVRLTWRMTDETKRQWRYQIRVAVRARHADDAVARVTRLMYKAP CHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCC RFDSIKAQVDKLTDFLRAEWDRTGHDVQLLSIPAALKPIPRVASDGIPVAEWIAAQMPEQ CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCCHHHCCCCCHHHHHHHCCCCC AA CC >Mature Secondary Structure SMVVIKDRAALMQRLMDAVIQGYHSYTFGTVKTERVHALCEKFSDRYLVALNRNQLAYR CEEEECCHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHH RAKGFGNARLILADLGDPNGLHWWLLVTDGAHPAREREKGSRKTREDLKDALKPGERIHV HHCCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCCCEEEE SGYELLKMAHSKAVGGGVRLTWRMTDETKRQWRYQIRVAVRARHADDAVARVTRLMYKAP CHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCC RFDSIKAQVDKLTDFLRAEWDRTGHDVQLLSIPAALKPIPRVASDGIPVAEWIAAQMPEQ CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCCHHHCCCCCHHHHHHHCCCCC AA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA