| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688301
Identifier: 116688301
GI number: 116688301
Start: 319276
End: 320358
Strand: Direct
Name: 116688301
Synonym: Bcen2424_0277
Alternate gene names: NA
Gene position: 319276-320358 (Clockwise)
Preceding gene: 116688298
Following gene: 116688302
Centisome position: 9.16
GC content: 74.42
Gene sequence:
>1083_bases ATGTCCGCCCGCTCGTTTTCCACGCCCTTTTCCGAACGCTTCGGCCTGCGTCTGCCGCTCGTGCAGGCGCCGATGGTCGG CGCGACCACGACCGCGATGGCCGCCGCCGCATCGAATGCCGGTGCGCTCGGCAGCTTCGGCGCCGGCGCGCTCGCGCCCG AGCGTATCGAAGCCGAAGTCGCCGCGATCCGCGCGGCGACCGATCGCCCGTTCGCGATCAACCTGTTCGTGTTGCCCGAT GACGCCGCGCCGGACGCGGCGACCGTCGCGCGCGCACTCGCGGCGATCGACCCGCTGAACGCCGCGCTCGGCCTGCCGCC GGGCACGGCGCCCGCGCGCTACGCGCCCGATTTCCGCGCGCAGCTCGATGCACTCGTCGCGCTGCGCGTGCCGGTCGCGA GCTTCACGTTCGGCGTGCTCGACGCGGCCGACGTCGCCCGTCTGAAAGCCGCCGGCACGTATGTGATCGGCACCGCGACG CACGTCGCCGAAGGGCTCGCGTGGCAGGCGGCCGGCGCCGATGCGATCTCCGCGCAGGGCGCCGAGGCCGGCGGCCATCG CGGCACCTTCATCGGTGCCGCCGAGGACGCGCTGATCGGCACGTTCGCGCTCGTCCCGCAGCTCGTCGACGCGACCGGCC TGCCCGTGCTGGCCGCGGGCGGCATCATGGACGGCCGCGGCATCGCGGCCGCACTGGCGCTCGGCGCGCAGGGCGCACAG CTCGGCACCGCGTTCCTCACGTGCGCGGAAAGCGCGATCGCCGCGGACTGGAAGGCACGCCTGCTCGCGAGCGCCGATAC GTCGACGCAGGTCACGCGCGCGATCACCGGCCGTCATGCACGCGGGCTGCGCAATACGCTGATGGCGCGGCTCGGCGAGC ACGTGGCCGACGTCCCGCCGTATCCGGTGCAGAACGCGCTGACCCAGCCGTTGCGCCAGGCCGCCGCGCGCGCGAACGAT GGCGACTACCTGTCGCTGTGGGCCGGCCAGGGCGCGCCGCTCGCGCGGCGGCGCGGCGATGCGTTGACGACGTCGCAACT GGTCGCCGCGCTCGATGCGGAATGGCGCGCATCGGCTGCTTGA
Upstream 100 bases:
>100_bases CGATCTCGATTATTCATTTTTCGGCGCCGTGCCGCTTCGATAGAGTCGATGTGTCGGCCTTTACAAAGCGCTTTCGCGCA TCGTCATCGAAGGATTCGCC
Downstream 100 bases:
>100_bases ACGCTGCTTCAACCGCTGGAATCATTGATATCCAACGACGAAACGCGCGTGCTGTCACGCGCGTTTCATTCAATGATCGC GGGCACAAAATACCGAATCG
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MSARSFSTPFSERFGLRLPLVQAPMVGATTTAMAAAASNAGALGSFGAGALAPERIEAEVAAIRAATDRPFAINLFVLPD DAAPDAATVARALAAIDPLNAALGLPPGTAPARYAPDFRAQLDALVALRVPVASFTFGVLDAADVARLKAAGTYVIGTAT HVAEGLAWQAAGADAISAQGAEAGGHRGTFIGAAEDALIGTFALVPQLVDATGLPVLAAGGIMDGRGIAAALALGAQGAQ LGTAFLTCAESAIAADWKARLLASADTSTQVTRAITGRHARGLRNTLMARLGEHVADVPPYPVQNALTQPLRQAAARAND GDYLSLWAGQGAPLARRRGDALTTSQLVAALDAEWRASAA
Sequences:
>Translated_360_residues MSARSFSTPFSERFGLRLPLVQAPMVGATTTAMAAAASNAGALGSFGAGALAPERIEAEVAAIRAATDRPFAINLFVLPD DAAPDAATVARALAAIDPLNAALGLPPGTAPARYAPDFRAQLDALVALRVPVASFTFGVLDAADVARLKAAGTYVIGTAT HVAEGLAWQAAGADAISAQGAEAGGHRGTFIGAAEDALIGTFALVPQLVDATGLPVLAAGGIMDGRGIAAALALGAQGAQ LGTAFLTCAESAIAADWKARLLASADTSTQVTRAITGRHARGLRNTLMARLGEHVADVPPYPVQNALTQPLRQAAARAND GDYLSLWAGQGAPLARRRGDALTTSQLVAALDAEWRASAA >Mature_359_residues SARSFSTPFSERFGLRLPLVQAPMVGATTTAMAAAASNAGALGSFGAGALAPERIEAEVAAIRAATDRPFAINLFVLPDD AAPDAATVARALAAIDPLNAALGLPPGTAPARYAPDFRAQLDALVALRVPVASFTFGVLDAADVARLKAAGTYVIGTATH VAEGLAWQAAGADAISAQGAEAGGHRGTFIGAAEDALIGTFALVPQLVDATGLPVLAAGGIMDGRGIAAALALGAQGAQL GTAFLTCAESAIAADWKARLLASADTSTQVTRAITGRHARGLRNTLMARLGEHVADVPPYPVQNALTQPLRQAAARANDG DYLSLWAGQGAPLARRRGDALTTSQLVAALDAEWRASAA
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322609, Length=365, Percent_Identity=29.8630136986301, Blast_Score=113, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 36344; Mature: 36212
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARSFSTPFSERFGLRLPLVQAPMVGATTTAMAAAASNAGALGSFGAGALAPERIEAEV CCCCCCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH AAIRAATDRPFAINLFVLPDDAAPDAATVARALAAIDPLNAALGLPPGTAPARYAPDFRA HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHH QLDALVALRVPVASFTFGVLDAADVARLKAAGTYVIGTATHVAEGLAWQAAGADAISAQG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCEEECCCCCHHHCCC AEAGGHRGTFIGAAEDALIGTFALVPQLVDATGLPVLAAGGIMDGRGIAAALALGAQGAQ CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCHH LGTAFLTCAESAIAADWKARLLASADTSTQVTRAITGRHARGLRNTLMARLGEHVADVPP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YPVQNALTQPLRQAAARANDGDYLSLWAGQGAPLARRRGDALTTSQLVAALDAEWRASAA CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHCCCHHCCCC >Mature Secondary Structure SARSFSTPFSERFGLRLPLVQAPMVGATTTAMAAAASNAGALGSFGAGALAPERIEAEV CCCCCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH AAIRAATDRPFAINLFVLPDDAAPDAATVARALAAIDPLNAALGLPPGTAPARYAPDFRA HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHH QLDALVALRVPVASFTFGVLDAADVARLKAAGTYVIGTATHVAEGLAWQAAGADAISAQG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCEEECCCCCHHHCCC AEAGGHRGTFIGAAEDALIGTFALVPQLVDATGLPVLAAGGIMDGRGIAAALALGAQGAQ CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCHH LGTAFLTCAESAIAADWKARLLASADTSTQVTRAITGRHARGLRNTLMARLGEHVADVPP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YPVQNALTQPLRQAAARANDGDYLSLWAGQGAPLARRRGDALTTSQLVAALDAEWRASAA CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA