| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688259
Identifier: 116688259
GI number: 116688259
Start: 272584
End: 273405
Strand: Reverse
Name: 116688259
Synonym: Bcen2424_0235
Alternate gene names: NA
Gene position: 273405-272584 (Counterclockwise)
Preceding gene: 116688260
Following gene: 116688258
Centisome position: 7.85
GC content: 54.38
Gene sequence:
>822_bases ATGAAGTGCATGATTTGCGACGCCGACGGCGACTACTATTTCTCGAAGACCTATACCGAGCGACCTTTTTCCGACTTCAT GAGTTCGATCGGCAAGGTCGACTATTACAAATGTCGGCAGTGCGGCTTCGTCTGGTCCGGCACACATCAATCGCTACCGG CGGAGAAATGGAGTGAATTGAATCGGCAGTTTCATCACTACATCGAGAATCCCGCCAACGAAACGAAGGGCAACCAGCCG CCGTACGCCGAACAGGCCATGATGCTCGCCCTGCTCGGAAAGAACGGCGTGATTCGCCTGGACAACATGGTCGACTATGC CGCCGGGTACGGTACGTTGAGCAATGTCCTGGCGAAATACTACGATCTTGAACTGCCGATCTTCGATCTCTACGTGAAAA ACGATGGCTCGGGAAGATATATCGATCCATCCAACCTCGGTCGCTACAAGACCGTGATCAATTCGGCGATGTTCGAGCAT GTCCTGCGCCGCAGCGATCTCGATTTCGTGCATGACATGGTCGATCACGACGGTGCATTGGTCATCCACACGGTTGTCTG TGAACGCGTGCCGAACGACCCGGAATGGTTCTACTTGCGCCCCCCCGTGCATACCGCCTTTCATACCAATCGAAGCATGA CCATCCTGATGGAGCAATGGGGCTATCGGGCATCGCTCTACTGTCCTCAGGCCAAGTGCTGGGTTCTGCTTCGCGACGAG TGCGCACATATCGGCGAAACGGTTGCATCCATCAATCGCGAACTCCAGACCACGTGGTTCCACTACAAGGAAGGATTCGT CGACTACTGGAAGGGATTCTAG
Upstream 100 bases:
>100_bases CGCTCGAACCGGGTACGTTCGAAGCCCGGTGTCACTGAACACGGCTCCGCGACCAGGCGGCCGCCTATCGCATCACTCAG CAGAAAGAGAGCGCGACAAA
Downstream 100 bases:
>100_bases ATCAGCCTGCATGTGACGAAATGCATCGATGCCCCGTCCTTCACGTGAGCTGACAGGACGACCCGCGCATACCGGCCGGC AATGCGTGGCCGCGAGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MKCMICDADGDYYFSKTYTERPFSDFMSSIGKVDYYKCRQCGFVWSGTHQSLPAEKWSELNRQFHHYIENPANETKGNQP PYAEQAMMLALLGKNGVIRLDNMVDYAAGYGTLSNVLAKYYDLELPIFDLYVKNDGSGRYIDPSNLGRYKTVINSAMFEH VLRRSDLDFVHDMVDHDGALVIHTVVCERVPNDPEWFYLRPPVHTAFHTNRSMTILMEQWGYRASLYCPQAKCWVLLRDE CAHIGETVASINRELQTTWFHYKEGFVDYWKGF
Sequences:
>Translated_273_residues MKCMICDADGDYYFSKTYTERPFSDFMSSIGKVDYYKCRQCGFVWSGTHQSLPAEKWSELNRQFHHYIENPANETKGNQP PYAEQAMMLALLGKNGVIRLDNMVDYAAGYGTLSNVLAKYYDLELPIFDLYVKNDGSGRYIDPSNLGRYKTVINSAMFEH VLRRSDLDFVHDMVDHDGALVIHTVVCERVPNDPEWFYLRPPVHTAFHTNRSMTILMEQWGYRASLYCPQAKCWVLLRDE CAHIGETVASINRELQTTWFHYKEGFVDYWKGF >Mature_273_residues MKCMICDADGDYYFSKTYTERPFSDFMSSIGKVDYYKCRQCGFVWSGTHQSLPAEKWSELNRQFHHYIENPANETKGNQP PYAEQAMMLALLGKNGVIRLDNMVDYAAGYGTLSNVLAKYYDLELPIFDLYVKNDGSGRYIDPSNLGRYKTVINSAMFEH VLRRSDLDFVHDMVDHDGALVIHTVVCERVPNDPEWFYLRPPVHTAFHTNRSMTILMEQWGYRASLYCPQAKCWVLLRDE CAHIGETVASINRELQTTWFHYKEGFVDYWKGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31764; Mature: 31764
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCMICDADGDYYFSKTYTERPFSDFMSSIGKVDYYKCRQCGFVWSGTHQSLPAEKWSEL CEEEEECCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCHHHHHHH NRQFHHYIENPANETKGNQPPYAEQAMMLALLGKNGVIRLDNMVDYAAGYGTLSNVLAKY HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHHH YDLELPIFDLYVKNDGSGRYIDPSNLGRYKTVINSAMFEHVLRRSDLDFVHDMVDHDGAL HCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCE VIHTVVCERVPNDPEWFYLRPPVHTAFHTNRSMTILMEQWGYRASLYCPQAKCWVLLRDE EEEEHHHHHCCCCCCEEEECCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCEEEEEHHH CAHIGETVASINRELQTTWFHYKEGFVDYWKGF HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC >Mature Secondary Structure MKCMICDADGDYYFSKTYTERPFSDFMSSIGKVDYYKCRQCGFVWSGTHQSLPAEKWSEL CEEEEECCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCHHHHHHH NRQFHHYIENPANETKGNQPPYAEQAMMLALLGKNGVIRLDNMVDYAAGYGTLSNVLAKY HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHHH YDLELPIFDLYVKNDGSGRYIDPSNLGRYKTVINSAMFEHVLRRSDLDFVHDMVDHDGAL HCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCE VIHTVVCERVPNDPEWFYLRPPVHTAFHTNRSMTILMEQWGYRASLYCPQAKCWVLLRDE EEEEHHHHHCCCCCCEEEECCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCEEEEEHHH CAHIGETVASINRELQTTWFHYKEGFVDYWKGF HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA