| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688257
Identifier: 116688257
GI number: 116688257
Start: 270816
End: 271568
Strand: Direct
Name: 116688257
Synonym: Bcen2424_0233
Alternate gene names: NA
Gene position: 270816-271568 (Clockwise)
Preceding gene: 116688256
Following gene: 116688266
Centisome position: 7.77
GC content: 56.04
Gene sequence:
>753_bases ATGAAAGTCGCGATCATGCAACCGTATTTCCTGCCGTATATCGGCTACTTTCAACTGATTGGAGCGGTTGACCGGTTTGT TGTATACGACAACATCAAGTACACGAAGAAGGGGTGGTTCAACCGGAACCGCTTCCTGCTCAACGGCAGCGATGCGCTGT TCAGTATTCCGCTGAAACGAGATGCCGATTCGCTCGATGTTCGTGATCGCGAGGTGTCGTCTGATTACGATCCCGTGAAA CTTGCCGCCCAGTTGAAGGGAGCCTATGTTCGTGCGCCGTTCTTTGAGCAAGGATTCAACCTCGTGAGCGCCGTGATCGA CGCTGACGAGCCGAACCTGTTCAAGTTCATCAAGCGATCGATCGATGTCGTCGTGGATCGGCTCGGCATCGCCACGCGTA TCGATGTGTCGTCGTCGATCGACGTTGATCCGTCATTGAAGGGGCAGAGTCGCGTACTCGCGATCTGCGAGTCGCTGGGG GCGACGACGTATGTCAATGCGATCGGCGGTGTTGATTTGTACTCGCACGAAGACTTTGCGGCGCGCGGCATTGATCTGCG GTTTCTTCGGTCGAGGCCGATCGAATACGGTCAGTTCGGGGCGCCGTTCGTTCCCTGGCTGTCGATCGTGGACCTGCTGA TGTTCAACTCCGTTGCGGAAGTAAGGGACATGCTGACGGAATACGATTTGATTCAGGCAGTCCCTGCGAACGGGGTCGCG ATGCCCGATACGGTGCAGCAGGTATCGGGGTGA
Upstream 100 bases:
>100_bases TGCCGCGCATTTCAGGGAGTGCGTCGATGCGTAGCCTGTTTGGCATGCCGCGCCGCTCTCCAGCCATTTTTTGTGCCGTT TGTCCGTCAGGGGTGAGGCG
Downstream 100 bases:
>100_bases CCGGTCACGGCCGTGTCCTGTCGGGGACGCGGCCGTTCGAGCGGCTGGCCTTGCTTGTGCAGGTAGGGCGATACGCACGC GCGCTGCGTGCGCCGTGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MKVAIMQPYFLPYIGYFQLIGAVDRFVVYDNIKYTKKGWFNRNRFLLNGSDALFSIPLKRDADSLDVRDREVSSDYDPVK LAAQLKGAYVRAPFFEQGFNLVSAVIDADEPNLFKFIKRSIDVVVDRLGIATRIDVSSSIDVDPSLKGQSRVLAICESLG ATTYVNAIGGVDLYSHEDFAARGIDLRFLRSRPIEYGQFGAPFVPWLSIVDLLMFNSVAEVRDMLTEYDLIQAVPANGVA MPDTVQQVSG
Sequences:
>Translated_250_residues MKVAIMQPYFLPYIGYFQLIGAVDRFVVYDNIKYTKKGWFNRNRFLLNGSDALFSIPLKRDADSLDVRDREVSSDYDPVK LAAQLKGAYVRAPFFEQGFNLVSAVIDADEPNLFKFIKRSIDVVVDRLGIATRIDVSSSIDVDPSLKGQSRVLAICESLG ATTYVNAIGGVDLYSHEDFAARGIDLRFLRSRPIEYGQFGAPFVPWLSIVDLLMFNSVAEVRDMLTEYDLIQAVPANGVA MPDTVQQVSG >Mature_250_residues MKVAIMQPYFLPYIGYFQLIGAVDRFVVYDNIKYTKKGWFNRNRFLLNGSDALFSIPLKRDADSLDVRDREVSSDYDPVK LAAQLKGAYVRAPFFEQGFNLVSAVIDADEPNLFKFIKRSIDVVVDRLGIATRIDVSSSIDVDPSLKGQSRVLAICESLG ATTYVNAIGGVDLYSHEDFAARGIDLRFLRSRPIEYGQFGAPFVPWLSIVDLLMFNSVAEVRDMLTEYDLIQAVPANGVA MPDTVQQVSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014985 [H]
Pfam domain/function: PF08889 WbqC [H]
EC number: NA
Molecular weight: Translated: 27926; Mature: 27926
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVAIMQPYFLPYIGYFQLIGAVDRFVVYDNIKYTKKGWFNRNRFLLNGSDALFSIPLKR CEEEEECCHHHHHHHHHHHHHHHHHEEEECCCEECCCCCCCCCEEEEECCCCEEECCCCC DADSLDVRDREVSSDYDPVKLAAQLKGAYVRAPFFEQGFNLVSAVIDADEPNLFKFIKRS CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH IDVVVDRLGIATRIDVSSSIDVDPSLKGQSRVLAICESLGATTYVNAIGGVDLYSHEDFA HHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHH ARGIDLRFLRSRPIEYGQFGAPFVPWLSIVDLLMFNSVAEVRDMLTEYDLIQAVPANGVA HCCCCEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC MPDTVQQVSG CCHHHHHHCC >Mature Secondary Structure MKVAIMQPYFLPYIGYFQLIGAVDRFVVYDNIKYTKKGWFNRNRFLLNGSDALFSIPLKR CEEEEECCHHHHHHHHHHHHHHHHHEEEECCCEECCCCCCCCCEEEEECCCCEEECCCCC DADSLDVRDREVSSDYDPVKLAAQLKGAYVRAPFFEQGFNLVSAVIDADEPNLFKFIKRS CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH IDVVVDRLGIATRIDVSSSIDVDPSLKGQSRVLAICESLGATTYVNAIGGVDLYSHEDFA HHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHH ARGIDLRFLRSRPIEYGQFGAPFVPWLSIVDLLMFNSVAEVRDMLTEYDLIQAVPANGVA HCCCCEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC MPDTVQQVSG CCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]