Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116688250

Identifier: 116688250

GI number: 116688250

Start: 262899

End: 263843

Strand: Reverse

Name: 116688250

Synonym: Bcen2424_0226

Alternate gene names: NA

Gene position: 263843-262899 (Counterclockwise)

Preceding gene: 116688254

Following gene: 116688248

Centisome position: 7.57

GC content: 62.54

Gene sequence:

>945_bases
ATGATGGTAAGTCGCAAAACTCGTAACATCAACAGGGACTTGGCGCATCTGCGCGCAGGCGAGCAGTACCTTCTGGGGCT
CCCGCTCAACACGATTCAGCCGCAACGCCTAGAGCGTGCTGGTCTCGGCGCGCATCCCGCAAACGGCACCCGCGTGTTGC
CGCCAGCAACCGGCGGCGCCGCCAGCCGCCGCAACGCGAATGGGTTCGACATTATCCACCGCGACCAGCCGAAGGAAACG
CGGTACCGCCAAATCAGTTGGACCTGGACGGAACACCACGGCCGCGACACCGTCGAGAAGACGGGCGTGAAGGACGTGCC
GTACCTGCGGTATCCCCGCACGTCCATTCCTCCCTACGCGGTCGAGCTGCAGATTCAAACGCGTCGCGACGGCGCATCAT
TCGTAGTCGCCGGTCCGTTCACCGTCGGTAGCGAACTCGATGCCGTCGCTACCAATACCGCCAACGTCTTCTGCGAGCAG
TTTGGCGGCTACGAGATTCTGAACGTGACTCTCGGAGCATGGGTCGCAACCCCCGTGCGCCGCTTGAACTGGGAACTGCT
GCCGCCCGGTCGCAATCCCTGGCTCAGCGCAAAACCCGCGCTCGACCGAATCGTCTCGAGCGCACCGGCAGGTAATCGCG
ACGTTATCGCCGCACGGTTTGCGGCCATTGGCAGCCACTCGCCTGACTTCGTTGCGGTCGGCGCGGCCGGATTCGACGGC
TATGCCGTGTTCGGGTTTCCCCGTCAAGGATTCTGCCTGCTCGAGAGCCGTCAGGTGAACAACGCTACCTATGTGCTTTC
GGACACGGACTGGGAGCGCGTTTCGCAAATGTCCAAAGCGGAAATCCTCTCCGCCGGAGCGCACCAGCGGCGCCTCATCC
ATACGCGCAACTGGTTTGACGAACTCGAACTTATGTTTGCTAGTCCGGGACGTCGCACCGCATGA

Upstream 100 bases:

>100_bases
AAATTTCTGCCGGCGTCCACGGACTGCTTCTCAAGAGTCCTGTCTAGTAAGGGCAAGAGCGCAAGGTGCGCCGTGCCCAC
ACTGTATAAGGACAATGAAA

Downstream 100 bases:

>100_bases
CGGGCCTGCTAACACGCACACTCACACACCCCTGGCTGGCGAGAGCGTCGCAATTTCAACGCGGCGCCTCGCCGGAAGTT
AAAGGAAATCTAGACGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MMVSRKTRNINRDLAHLRAGEQYLLGLPLNTIQPQRLERAGLGAHPANGTRVLPPATGGAASRRNANGFDIIHRDQPKET
RYRQISWTWTEHHGRDTVEKTGVKDVPYLRYPRTSIPPYAVELQIQTRRDGASFVVAGPFTVGSELDAVATNTANVFCEQ
FGGYEILNVTLGAWVATPVRRLNWELLPPGRNPWLSAKPALDRIVSSAPAGNRDVIAARFAAIGSHSPDFVAVGAAGFDG
YAVFGFPRQGFCLLESRQVNNATYVLSDTDWERVSQMSKAEILSAGAHQRRLIHTRNWFDELELMFASPGRRTA

Sequences:

>Translated_314_residues
MMVSRKTRNINRDLAHLRAGEQYLLGLPLNTIQPQRLERAGLGAHPANGTRVLPPATGGAASRRNANGFDIIHRDQPKET
RYRQISWTWTEHHGRDTVEKTGVKDVPYLRYPRTSIPPYAVELQIQTRRDGASFVVAGPFTVGSELDAVATNTANVFCEQ
FGGYEILNVTLGAWVATPVRRLNWELLPPGRNPWLSAKPALDRIVSSAPAGNRDVIAARFAAIGSHSPDFVAVGAAGFDG
YAVFGFPRQGFCLLESRQVNNATYVLSDTDWERVSQMSKAEILSAGAHQRRLIHTRNWFDELELMFASPGRRTA
>Mature_314_residues
MMVSRKTRNINRDLAHLRAGEQYLLGLPLNTIQPQRLERAGLGAHPANGTRVLPPATGGAASRRNANGFDIIHRDQPKET
RYRQISWTWTEHHGRDTVEKTGVKDVPYLRYPRTSIPPYAVELQIQTRRDGASFVVAGPFTVGSELDAVATNTANVFCEQ
FGGYEILNVTLGAWVATPVRRLNWELLPPGRNPWLSAKPALDRIVSSAPAGNRDVIAARFAAIGSHSPDFVAVGAAGFDG
YAVFGFPRQGFCLLESRQVNNATYVLSDTDWERVSQMSKAEILSAGAHQRRLIHTRNWFDELELMFASPGRRTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34787; Mature: 34787

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVSRKTRNINRDLAHLRAGEQYLLGLPLNTIQPQRLERAGLGAHPANGTRVLPPATGGA
CCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCCC
ASRRNANGFDIIHRDQPKETRYRQISWTWTEHHGRDTVEKTGVKDVPYLRYPRTSIPPYA
CCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCEECCCCCCCCEE
VELQIQTRRDGASFVVAGPFTVGSELDAVATNTANVFCEQFGGYEILNVTLGAWVATPVR
EEEEEEECCCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEHHHHHHHHHH
RLNWELLPPGRNPWLSAKPALDRIVSSAPAGNRDVIAARFAAIGSHSPDFVAVGAAGFDG
HCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC
YAVFGFPRQGFCLLESRQVNNATYVLSDTDWERVSQMSKAEILSAGAHQRRLIHTRNWFD
EEEEECCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCHHH
ELELMFASPGRRTA
HHHEEEECCCCCCC
>Mature Secondary Structure
MMVSRKTRNINRDLAHLRAGEQYLLGLPLNTIQPQRLERAGLGAHPANGTRVLPPATGGA
CCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCCC
ASRRNANGFDIIHRDQPKETRYRQISWTWTEHHGRDTVEKTGVKDVPYLRYPRTSIPPYA
CCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCEECCCCCCCCEE
VELQIQTRRDGASFVVAGPFTVGSELDAVATNTANVFCEQFGGYEILNVTLGAWVATPVR
EEEEEEECCCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEHHHHHHHHHH
RLNWELLPPGRNPWLSAKPALDRIVSSAPAGNRDVIAARFAAIGSHSPDFVAVGAAGFDG
HCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC
YAVFGFPRQGFCLLESRQVNNATYVLSDTDWERVSQMSKAEILSAGAHQRRLIHTRNWFD
EEEEECCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCHHH
ELELMFASPGRRTA
HHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA