| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688230
Identifier: 116688230
GI number: 116688230
Start: 227557
End: 229626
Strand: Direct
Name: 116688230
Synonym: Bcen2424_0206
Alternate gene names: NA
Gene position: 227557-229626 (Clockwise)
Preceding gene: 116688222
Following gene: 116688231
Centisome position: 6.53
GC content: 55.75
Gene sequence:
>2070_bases ATGAAGCTGCGTCATGTTCAGATAAAGAACTTCCGTCTTCTCTCGGATGTTGATCTTGCTTTGGAAGATCTCACGACAGT CGTTGTGGGTCGCAACAACAGCGGCAAGACGTCGCTCTCTGAAGTCATCCGACGGCTACTCGCCGACGGCAGTGCACAGT TTCAGCTTGAAGACTTCTCCAGCGCCTGCTATGAGGGCTTTCGTCTAGCTTGGGAGGCTCGGAGCAACGACGAACACGAC GATATCGTCCGGGCGCTCATCCCCTACATCGAGCTGCGACTGACTTTCCAGTACGATCCGAATCAGCCGCAATTGGGACC GCTGAGTCCTTTTGTTATCGACCTCGACCCTGACTGCACCGAGGCGCTTGTTGTTGTCCGCTACGAGCTGAAAGACGGTC AGCTTTCCCAGCTTTTTGATGGTTTGCCACCGACGCCGTTGTCTGCCGAAGCTCGGTTAACGTTCTTTCGTACGTTGCGC GATCGAATACCAGGCAATTATGCGACGCGCATATGGGCAGAAGACCCCAATGACGCTGGAAACCAGCGCCAGCTCCTTCC CAACGCAGTGAAGGGTCTGGTCAAAACGGGTTTCATCAACGCGCAACGTGGCCTTGACGACGTCACGTCACGAGAGTCGG ACGTTCTTGCCAAGACTGTCGAGCTTCTTTTCGCAACGGCGTCATCGGCGTCGGCAGATGCGGCCGACAAACAGATCGCA GATTCCCTGACTGATGCCGTCCAGGGCATTCAATCGCAGATTGATACAAACTTCGGCGGACAGCTAAAGGGATTGATCCC TGCCTTGAAGAGCTTTGGCTACCCTGGACTAGGTAATCAGGAGCTGCATACCGAGACCCTTCTTGATGTGCGAAAGCTGT TGTCCAATTTCACGAAAGTCCGTTACGCCGGCTACAGCGGTGTCGCGTTGCCTGAATCGTACAACGGCCTCGGTGCGCGC AATCTGATCTTCATTCTCTTGCAGTTAGCCGGGTTCTACAAAGCCTATCGCGCCGAAGCGACGGCCCCAGGCATCCACCT CATTTTCATCGAGGAGCCCGAGGCGCATCTGCATCCCCAGATGCAGGAGGTATTCATCCGGCAACTCGCCAAAACGGCCC AATTGCTGGTGGACAGTACAGAAGACAAGACCCCCTGGCCGGTTCAGTTCGTCGTTTCTACGCATTCGTCACACGTCGCA AACGAAGCGGGCTTCGAAAGTATTCGTTACTTCCTCGGACGAGATGTGTCTGGAGCGCAACCCGGCGTCCGGCAGACGAT GATCAAGGATCTGCGCAGAGGGCTGGATGGCGTTTCTGAGCCTGACAAGAAATTCCTTCACCAGTACATGACACTGACGC GTTGTGATCTCTTTTTTGCAGACAAGGCCATTCTGGTTGAAGGCTTGAGCGAACGTCTTCTATTGCCGGTCCTCGTCGGA AAACTCGAAGAGGCTGAGCCCAACTCCCCGAAGTTGTCCAGCCAGTACGTCACCACGATCGAAGTGGGTGGCGCATACGC GCATTTGTTCTTCAAGCTTCTACACTTCCTCGAGCTCCGCAGTTTGATAATCACCGACCTTGACGCCGTGGAAAAAGCGG GCGGTTCGGCGTGCGAGGTCCACAAAGGAACGTATTCAAGCAACGCTTGCCTGAAGGCGTGGTTCTCGGATGACGACCCG TTCACTCTCGCGGGACTTTTGGCCAAGGGCGAGGCCGAGAAAATAAAAGAGGGCAATCGCATCGCCTATCAATGTGCGGA AGCGGAAGGTGGTCCATGTGGACGGACGTTCGAGGACGCCTTCATCCTCTCAAATCGGGCGCTGTTTGGGCTGACGGGCA ATACCAGGGAAGAGTTGGAGGTTGCCGCTCGTAGCAAGGCAGGAGAATTCAAGAAATCGGACTTCGCGCTCAGGTATGCC ATCGAGGAGAAAGGGTGGAGTGCTCCGAAGTATCTTGTCGACGGCGTGCGATGGCTAGCGGCCGGCATCGAACCTGACCA GTCCGATCCTGCGCTGGCTTTAGCAGCGGACGTTATCGTTGCGAAGGCGGAGGCCGCTCCTCATGGCTGA
Upstream 100 bases:
>100_bases GCATTAAAAAACTATCTCTAGATCGATCGCGCTCAGCCTGGGGCATTTATGAACTACCATACTCAAAATCAACGCTTCAA ATAGCGAATTCGGGGAATAA
Downstream 100 bases:
>100_bases TATCCAATCTCCGGCCGAGCTGGCGAGTCAATGTGCCCTCGACGCAATGTTTCAATGCCTGGATGAAGGACGGAGTTTCC GGCTCGAAGCCGGCGCTGGT
Product: ATP-dependent OLD family endonuclease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 689; Mature: 689
Protein sequence:
>689_residues MKLRHVQIKNFRLLSDVDLALEDLTTVVVGRNNSGKTSLSEVIRRLLADGSAQFQLEDFSSACYEGFRLAWEARSNDEHD DIVRALIPYIELRLTFQYDPNQPQLGPLSPFVIDLDPDCTEALVVVRYELKDGQLSQLFDGLPPTPLSAEARLTFFRTLR DRIPGNYATRIWAEDPNDAGNQRQLLPNAVKGLVKTGFINAQRGLDDVTSRESDVLAKTVELLFATASSASADAADKQIA DSLTDAVQGIQSQIDTNFGGQLKGLIPALKSFGYPGLGNQELHTETLLDVRKLLSNFTKVRYAGYSGVALPESYNGLGAR NLIFILLQLAGFYKAYRAEATAPGIHLIFIEEPEAHLHPQMQEVFIRQLAKTAQLLVDSTEDKTPWPVQFVVSTHSSHVA NEAGFESIRYFLGRDVSGAQPGVRQTMIKDLRRGLDGVSEPDKKFLHQYMTLTRCDLFFADKAILVEGLSERLLLPVLVG KLEEAEPNSPKLSSQYVTTIEVGGAYAHLFFKLLHFLELRSLIITDLDAVEKAGGSACEVHKGTYSSNACLKAWFSDDDP FTLAGLLAKGEAEKIKEGNRIAYQCAEAEGGPCGRTFEDAFILSNRALFGLTGNTREELEVAARSKAGEFKKSDFALRYA IEEKGWSAPKYLVDGVRWLAAGIEPDQSDPALALAADVIVAKAEAAPHG
Sequences:
>Translated_689_residues MKLRHVQIKNFRLLSDVDLALEDLTTVVVGRNNSGKTSLSEVIRRLLADGSAQFQLEDFSSACYEGFRLAWEARSNDEHD DIVRALIPYIELRLTFQYDPNQPQLGPLSPFVIDLDPDCTEALVVVRYELKDGQLSQLFDGLPPTPLSAEARLTFFRTLR DRIPGNYATRIWAEDPNDAGNQRQLLPNAVKGLVKTGFINAQRGLDDVTSRESDVLAKTVELLFATASSASADAADKQIA DSLTDAVQGIQSQIDTNFGGQLKGLIPALKSFGYPGLGNQELHTETLLDVRKLLSNFTKVRYAGYSGVALPESYNGLGAR NLIFILLQLAGFYKAYRAEATAPGIHLIFIEEPEAHLHPQMQEVFIRQLAKTAQLLVDSTEDKTPWPVQFVVSTHSSHVA NEAGFESIRYFLGRDVSGAQPGVRQTMIKDLRRGLDGVSEPDKKFLHQYMTLTRCDLFFADKAILVEGLSERLLLPVLVG KLEEAEPNSPKLSSQYVTTIEVGGAYAHLFFKLLHFLELRSLIITDLDAVEKAGGSACEVHKGTYSSNACLKAWFSDDDP FTLAGLLAKGEAEKIKEGNRIAYQCAEAEGGPCGRTFEDAFILSNRALFGLTGNTREELEVAARSKAGEFKKSDFALRYA IEEKGWSAPKYLVDGVRWLAAGIEPDQSDPALALAADVIVAKAEAAPHG >Mature_689_residues MKLRHVQIKNFRLLSDVDLALEDLTTVVVGRNNSGKTSLSEVIRRLLADGSAQFQLEDFSSACYEGFRLAWEARSNDEHD DIVRALIPYIELRLTFQYDPNQPQLGPLSPFVIDLDPDCTEALVVVRYELKDGQLSQLFDGLPPTPLSAEARLTFFRTLR DRIPGNYATRIWAEDPNDAGNQRQLLPNAVKGLVKTGFINAQRGLDDVTSRESDVLAKTVELLFATASSASADAADKQIA DSLTDAVQGIQSQIDTNFGGQLKGLIPALKSFGYPGLGNQELHTETLLDVRKLLSNFTKVRYAGYSGVALPESYNGLGAR NLIFILLQLAGFYKAYRAEATAPGIHLIFIEEPEAHLHPQMQEVFIRQLAKTAQLLVDSTEDKTPWPVQFVVSTHSSHVA NEAGFESIRYFLGRDVSGAQPGVRQTMIKDLRRGLDGVSEPDKKFLHQYMTLTRCDLFFADKAILVEGLSERLLLPVLVG KLEEAEPNSPKLSSQYVTTIEVGGAYAHLFFKLLHFLELRSLIITDLDAVEKAGGSACEVHKGTYSSNACLKAWFSDDDP FTLAGLLAKGEAEKIKEGNRIAYQCAEAEGGPCGRTFEDAFILSNRALFGLTGNTREELEVAARSKAGEFKKSDFALRYA IEEKGWSAPKYLVDGVRWLAAGIEPDQSDPALALAADVIVAKAEAAPHG
Specific function: Unknown
COG id: COG3593
COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75760; Mature: 75760
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRHVQIKNFRLLSDVDLALEDLTTVVVGRNNSGKTSLSEVIRRLLADGSAQFQLEDFS CCCEEEEECCEEEHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHH SACYEGFRLAWEARSNDEHDDIVRALIPYIELRLTFQYDPNQPQLGPLSPFVIDLDPDCT HHHHHHHEEEEECCCCCCHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCC EALVVVRYELKDGQLSQLFDGLPPTPLSAEARLTFFRTLRDRIPGNYATRIWAEDPNDAG CEEEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC NQRQLLPNAVKGLVKTGFINAQRGLDDVTSRESDVLAKTVELLFATASSASADAADKQIA CHHHHHHHHHHHHHHHCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH DSLTDAVQGIQSQIDTNFGGQLKGLIPALKSFGYPGLGNQELHTETLLDVRKLLSNFTKV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHE RYAGYSGVALPESYNGLGARNLIFILLQLAGFYKAYRAEATAPGIHLIFIEEPEAHLHPQ EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHCHH MQEVFIRQLAKTAQLLVDSTEDKTPWPVQFVVSTHSSHVANEAGFESIRYFLGRDVSGAQ HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC PGVRQTMIKDLRRGLDGVSEPDKKFLHQYMTLTRCDLFFADKAILVEGLSERLLLPVLVG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHH KLEEAEPNSPKLSSQYVTTIEVGGAYAHLFFKLLHFLELRSLIITDLDAVEKAGGSACEV HHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE HKGTYSSNACLKAWFSDDDPFTLAGLLAKGEAEKIKEGNRIAYQCAEAEGGPCGRTFEDA ECCCCCCCCCEEEECCCCCCEEHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHH FILSNRALFGLTGNTREELEVAARSKAGEFKKSDFALRYAIEEKGWSAPKYLVDGVRWLA HEECCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHH AGIEPDQSDPALALAADVIVAKAEAAPHG CCCCCCCCCCHHHHHHHHHHEECCCCCCC >Mature Secondary Structure MKLRHVQIKNFRLLSDVDLALEDLTTVVVGRNNSGKTSLSEVIRRLLADGSAQFQLEDFS CCCEEEEECCEEEHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHH SACYEGFRLAWEARSNDEHDDIVRALIPYIELRLTFQYDPNQPQLGPLSPFVIDLDPDCT HHHHHHHEEEEECCCCCCHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCC EALVVVRYELKDGQLSQLFDGLPPTPLSAEARLTFFRTLRDRIPGNYATRIWAEDPNDAG CEEEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC NQRQLLPNAVKGLVKTGFINAQRGLDDVTSRESDVLAKTVELLFATASSASADAADKQIA CHHHHHHHHHHHHHHHCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH DSLTDAVQGIQSQIDTNFGGQLKGLIPALKSFGYPGLGNQELHTETLLDVRKLLSNFTKV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHE RYAGYSGVALPESYNGLGARNLIFILLQLAGFYKAYRAEATAPGIHLIFIEEPEAHLHPQ EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHCHH MQEVFIRQLAKTAQLLVDSTEDKTPWPVQFVVSTHSSHVANEAGFESIRYFLGRDVSGAQ HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC PGVRQTMIKDLRRGLDGVSEPDKKFLHQYMTLTRCDLFFADKAILVEGLSERLLLPVLVG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHH KLEEAEPNSPKLSSQYVTTIEVGGAYAHLFFKLLHFLELRSLIITDLDAVEKAGGSACEV HHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE HKGTYSSNACLKAWFSDDDPFTLAGLLAKGEAEKIKEGNRIAYQCAEAEGGPCGRTFEDA ECCCCCCCCCEEEECCCCCCEEHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHH FILSNRALFGLTGNTREELEVAARSKAGEFKKSDFALRYAIEEKGWSAPKYLVDGVRWLA HEECCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHH AGIEPDQSDPALALAADVIVAKAEAAPHG CCCCCCCCCCHHHHHHHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA