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The map label for this gene is nodD [H]

Identifier: 116688187

GI number: 116688187

Start: 181560

End: 182471

Strand: Direct

Name: nodD [H]

Synonym: Bcen2424_0163

Alternate gene names: 116688187

Gene position: 181560-182471 (Clockwise)

Preceding gene: 116688186

Following gene: 116688192

Centisome position: 5.21

GC content: 63.16

Gene sequence:

>912_bases
ATGCGCTTTAACAGACTGGACCTTAACCTGCTTGTCACTCTCGACGCGCTACTCGACGACCGCCGCATCACCCGCGCGGC
GGAACGTTTGAATCTGAGCCAGTCCGCGATCAGCGGGATGCTCGCCAAACTGCGCGAATATTTTGACGATGAATTGCTGG
TGCCTGTCGGCCGTAATCTCGAACTCACGCCGCTCGCGCGCGAGCTGGTTCAACCGGTGCGCGATCTGCTGCTGCAGGTG
CAGACAATCGTCGCGATCGATCCCGCGTTCGAGCCGGCCAATGCGCGGCGGCACTTCAAGATCGCGACCTCGGACTATGT
GATCAACGTGCTGATGCATCGGCTGATTCCGGTGATCGAACCGCTCGCGCCGTACCTCACGCTCGAACTGATGCCGCAGG
AGGACGCGCCCGAACGGTTGCGGCGCGGCGAATACGACTTTCTGATCATCCCGGAACCGTTCAAGGCGGACGATCATCCG
GCGATCGCGCTGTTCGACGACAGCTACGTCGGCGTGGTGTGGAACGGAAACCGGGCGGTCGGAGCCAGCATCGATGTCGC
CCGCTACGAACAGCTCGATCACGTGGCCACGTTGCTCGGCTGGCCCCGCCTGCCCAGCTACGACAGCCGCTACGTTGAAG
CGCAGGGGATCCGCCGGCGCGTGCGCGTGACGACCTCGGACTTCACGTCGATGGCGCCGGTGCTGATTGGCACGCAGATG
ATCGCGACGATGCATCGACGGCTCGCGACCGAATTGACACGGCGCATGCCGCTGCGCCTCGTCGAACTGGAGTTTCCCAT
TCCGCAGATGCGCGAGTTTCTGCAATGGCACGAGTACCGCGAGAAGGATCCGTGTCATCGCTGGCTGCGCGAGCAGATAA
TCTCGGTGGCCGCCGGGCTGGCCGCGCAATAG

Upstream 100 bases:

>100_bases
ATCACGGCGTTGCAGGCTAAGCGCAAACGCGCGAACATTCGGATCGTTTCGAATCTCAGGGCCGCCCGACGAGGCGGCCT
TTTGCATGGAGACGCGTGAG

Downstream 100 bases:

>100_bases
TTTGAAGAAACCCGATGCGGGCTGCCGTGACATCGCCCGGCGGCGTGTACCGCCGCCTCGTTACTTGTCGCCGCCGAGGA
CCCACAACGGAATCGCGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRFNRLDLNLLVTLDALLDDRRITRAAERLNLSQSAISGMLAKLREYFDDELLVPVGRNLELTPLARELVQPVRDLLLQV
QTIVAIDPAFEPANARRHFKIATSDYVINVLMHRLIPVIEPLAPYLTLELMPQEDAPERLRRGEYDFLIIPEPFKADDHP
AIALFDDSYVGVVWNGNRAVGASIDVARYEQLDHVATLLGWPRLPSYDSRYVEAQGIRRRVRVTTSDFTSMAPVLIGTQM
IATMHRRLATELTRRMPLRLVELEFPIPQMREFLQWHEYREKDPCHRWLREQIISVAAGLAAQ

Sequences:

>Translated_303_residues
MRFNRLDLNLLVTLDALLDDRRITRAAERLNLSQSAISGMLAKLREYFDDELLVPVGRNLELTPLARELVQPVRDLLLQV
QTIVAIDPAFEPANARRHFKIATSDYVINVLMHRLIPVIEPLAPYLTLELMPQEDAPERLRRGEYDFLIIPEPFKADDHP
AIALFDDSYVGVVWNGNRAVGASIDVARYEQLDHVATLLGWPRLPSYDSRYVEAQGIRRRVRVTTSDFTSMAPVLIGTQM
IATMHRRLATELTRRMPLRLVELEFPIPQMREFLQWHEYREKDPCHRWLREQIISVAAGLAAQ
>Mature_303_residues
MRFNRLDLNLLVTLDALLDDRRITRAAERLNLSQSAISGMLAKLREYFDDELLVPVGRNLELTPLARELVQPVRDLLLQV
QTIVAIDPAFEPANARRHFKIATSDYVINVLMHRLIPVIEPLAPYLTLELMPQEDAPERLRRGEYDFLIIPEPFKADDHP
AIALFDDSYVGVVWNGNRAVGASIDVARYEQLDHVATLLGWPRLPSYDSRYVEAQGIRRRVRVTTSDFTSMAPVLIGTQM
IATMHRRLATELTRRMPLRLVELEFPIPQMREFLQWHEYREKDPCHRWLREQIISVAAGLAAQ

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=294, Percent_Identity=27.891156462585, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081766, Length=290, Percent_Identity=25.5172413793103, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34925; Mature: 34925

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFNRLDLNLLVTLDALLDDRRITRAAERLNLSQSAISGMLAKLREYFDDELLVPVGRNL
CCCCEECHHHEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
ELTPLARELVQPVRDLLLQVQTIVAIDPAFEPANARRHFKIATSDYVINVLMHRLIPVIE
EECHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
PLAPYLTLELMPQEDAPERLRRGEYDFLIIPEPFKADDHPAIALFDDSYVGVVWNGNRAV
HHHHHEEEEECCCCCCHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCEEEEEEECCEEE
GASIDVARYEQLDHVATLLGWPRLPSYDSRYVEAQGIRRRVRVTTSDFTSMAPVLIGTQM
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEEEHHHHHHHHHHHHHHHH
IATMHRRLATELTRRMPLRLVELEFPIPQMREFLQWHEYREKDPCHRWLREQIISVAAGL
HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AAQ
CCC
>Mature Secondary Structure
MRFNRLDLNLLVTLDALLDDRRITRAAERLNLSQSAISGMLAKLREYFDDELLVPVGRNL
CCCCEECHHHEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
ELTPLARELVQPVRDLLLQVQTIVAIDPAFEPANARRHFKIATSDYVINVLMHRLIPVIE
EECHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
PLAPYLTLELMPQEDAPERLRRGEYDFLIIPEPFKADDHPAIALFDDSYVGVVWNGNRAV
HHHHHEEEEECCCCCCHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCEEEEEEECCEEE
GASIDVARYEQLDHVATLLGWPRLPSYDSRYVEAQGIRRRVRVTTSDFTSMAPVLIGTQM
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEEEHHHHHHHHHHHHHHHH
IATMHRRLATELTRRMPLRLVELEFPIPQMREFLQWHEYREKDPCHRWLREQIISVAAGL
HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AAQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]