| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688075
Identifier: 116688075
GI number: 116688075
Start: 52457
End: 53281
Strand: Reverse
Name: 116688075
Synonym: Bcen2424_0051
Alternate gene names: NA
Gene position: 53281-52457 (Counterclockwise)
Preceding gene: 116688076
Following gene: 116688072
Centisome position: 1.53
GC content: 71.27
Gene sequence:
>825_bases ATGACGGCAGTGGATGACGCAAACGAAGGCCGGCCAATGCGGCCGTGGGTGAGACGGCTCGTCACCGTGTTGCCGTGGGT GCTGGCAGGCGGCCTGGCGACGGCGGTGACGCTCGTCGCGCTCGCGCCGGCCGCGTGGATCGCGCCGCAGTTCGCGCGTG CGACCGGCGGCCACGTGAATCTCGCCGATCCGGACGGGTCGCTGTGGCACGGCTCGGGCACGCTGATGCTCGCGCCGGGC GCCGACCAGAGCGCGGCAACGCTGCTGCCGGGCCGGGTCGAATGGACCACGCGCTTCTGGCCGTTGCTGACCGGGCGTGT GCAGATGCGCATGCGGCAGACCGAAGCGATGCCCGATGCGGTCACGCTCGATGCGACGTGGCGCGGCGCGGTGCTGTCGG CGGGCACGATGGCCGTGCCTGCGTCGCTGCTCACCGGGCTCGGCACGCCGTTCAACACGCTCGACCTGCAGGGCGACGTG CGGCTCGGCTGGAGCGACTGGCGGTTGATCGGCAACAACGCGTTCGGCCAGCTGACGGTGACGATCGATTCGATGAGTTC GCGCGTGTCGCGCGTGAAGCCGCTCGGTTCGTACCGTGCGGTATTGCAGGCGAAGGGCGTGGGCGCCGATCTCGACCTGT CGACGACGCAGGGCCCGCTGTTCCTCGACGGGCACGGCAGCTTCGGCCCCGGCCAGGGATCGTTCCGCGGCACCGCGCAT GCGGCGCCCGAGCAGCAGGCGAACCTCGCCGGGCTGCTGAACCTGCTCGGCCACCCGATCGGCAACAACCAGGTGTCGCT GATCTTCGGCGACGCGCAGCGCTGA
Upstream 100 bases:
>100_bases ACAGTTCAAGGTGCAGGTCGGCGAGGCGCATGCGACGGCGCTGAAGGAAGACGGTCAGGTGGATCTGACGGCCGTGATGC AGCCTTCCGTCCAGAAATAG
Downstream 100 bases:
>100_bases TTCTGATTGGACGCGTCGCCCGCTTCCCTTTCTACTTCTGCGCGAGCGGCGCGGCGGCCGACGGTGCGGTGGCCGCGGGC GCGGCCGTACCGGACGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: General Secretory Pathway Protein N; Type II Secretion System Protein N; General Secretion Pathway Protein N
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MTAVDDANEGRPMRPWVRRLVTVLPWVLAGGLATAVTLVALAPAAWIAPQFARATGGHVNLADPDGSLWHGSGTLMLAPG ADQSAATLLPGRVEWTTRFWPLLTGRVQMRMRQTEAMPDAVTLDATWRGAVLSAGTMAVPASLLTGLGTPFNTLDLQGDV RLGWSDWRLIGNNAFGQLTVTIDSMSSRVSRVKPLGSYRAVLQAKGVGADLDLSTTQGPLFLDGHGSFGPGQGSFRGTAH AAPEQQANLAGLLNLLGHPIGNNQVSLIFGDAQR
Sequences:
>Translated_274_residues MTAVDDANEGRPMRPWVRRLVTVLPWVLAGGLATAVTLVALAPAAWIAPQFARATGGHVNLADPDGSLWHGSGTLMLAPG ADQSAATLLPGRVEWTTRFWPLLTGRVQMRMRQTEAMPDAVTLDATWRGAVLSAGTMAVPASLLTGLGTPFNTLDLQGDV RLGWSDWRLIGNNAFGQLTVTIDSMSSRVSRVKPLGSYRAVLQAKGVGADLDLSTTQGPLFLDGHGSFGPGQGSFRGTAH AAPEQQANLAGLLNLLGHPIGNNQVSLIFGDAQR >Mature_273_residues TAVDDANEGRPMRPWVRRLVTVLPWVLAGGLATAVTLVALAPAAWIAPQFARATGGHVNLADPDGSLWHGSGTLMLAPGA DQSAATLLPGRVEWTTRFWPLLTGRVQMRMRQTEAMPDAVTLDATWRGAVLSAGTMAVPASLLTGLGTPFNTLDLQGDVR LGWSDWRLIGNNAFGQLTVTIDSMSSRVSRVKPLGSYRAVLQAKGVGADLDLSTTQGPLFLDGHGSFGPGQGSFRGTAHA APEQQANLAGLLNLLGHPIGNNQVSLIFGDAQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28876; Mature: 28745
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVDDANEGRPMRPWVRRLVTVLPWVLAGGLATAVTLVALAPAAWIAPQFARATGGHVN CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHCCCCEEE LADPDGSLWHGSGTLMLAPGADQSAATLLPGRVEWTTRFWPLLTGRVQMRMRQTEAMPDA EECCCCCEEECCCEEEEECCCCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCE VTLDATWRGAVLSAGTMAVPASLLTGLGTPFNTLDLQGDVRLGWSDWRLIGNNAFGQLTV EEECCCCCCCEEECCCHHHHHHHHHHCCCCCCEEECCCCEEECCCCEEEECCCCCEEEEE TIDSMSSRVSRVKPLGSYRAVLQAKGVGADLDLSTTQGPLFLDGHGSFGPGQGSFRGTAH EEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC AAPEQQANLAGLLNLLGHPIGNNQVSLIFGDAQR CCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC >Mature Secondary Structure TAVDDANEGRPMRPWVRRLVTVLPWVLAGGLATAVTLVALAPAAWIAPQFARATGGHVN CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHCCCCEEE LADPDGSLWHGSGTLMLAPGADQSAATLLPGRVEWTTRFWPLLTGRVQMRMRQTEAMPDA EECCCCCEEECCCEEEEECCCCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCE VTLDATWRGAVLSAGTMAVPASLLTGLGTPFNTLDLQGDVRLGWSDWRLIGNNAFGQLTV EEECCCCCCCEEECCCHHHHHHHHHHCCCCCCEEECCCCEEECCCCEEEECCCCCEEEEE TIDSMSSRVSRVKPLGSYRAVLQAKGVGADLDLSTTQGPLFLDGHGSFGPGQGSFRGTAH EEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC AAPEQQANLAGLLNLLGHPIGNNQVSLIFGDAQR CCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA