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The map label for this gene is sufD [C]

Identifier: 116626729

GI number: 116626729

Start: 9674993

End: 9676255

Strand: Direct

Name: sufD [C]

Synonym: Acid_7701

Alternate gene names: 116626729

Gene position: 9674993-9676255 (Clockwise)

Preceding gene: 116626728

Following gene: 116626730

Centisome position: 97.08

GC content: 62.47

Gene sequence:

>1263_bases
ATGACGGCAGTCTCGGAACAAACCGGCGCCTGGTTGGAGCAGTTCACCAATCAACCCGCCGCGCCCGCGTGGCTCCAGCC
CCTCCGCGATAACGCCTTCCGCCGCTTCGCCGAGCTAGGCTTCCCCACCATCCATAACGAAGAGTGGCGCTTCACCAACA
TCGCTCCCATAGCGCGAACCAAGTTCGCGCCGGGCCGCACCGGTGAGGTCGCGACCAAACTCGCCAAGGGCCCCATTCAA
CTCGTGTTCGCCAACGGACACCTGCTGACCCGCCCCGAAACTCTGCCCGCGGGACTCCAGGCCGGCGGCTTTGCCGACGA
TCCCGCCGCGATCGAAAAGCACCTCGGAAAGTACGCCTCGTTCGACGAGAACGCCTTCGTCGCGCTCAATACCGCCATGA
CCCAGGATGGCGCGCTCATCCGCGTGGCACGCGGCGCCGTCATCGCCGAGCCCATCGAACTCTTCTACCTCACTTCGACC
GCCGCCACCCCCATCGCCACTCATCCGCGCGCGCTCATCCTGATCGGCGAAAACGCCCAGTGCAGCATCGTGGAGCGCTA
CCAGGGCGCGGGCGAAGGCGCCTACTTCACCAACGCCGTCACCGAAATCGTAGTCGGCGAGGGCGCCGTCGTGGACCACT
ACAAGGTCCAGCAGGAAACGCTGGCCGCCTACCACGTCTCCACTATTCAAGCGGAGCTGGGCCGCAGCTCCGTCTTCGCG
TCCCACTCGATCGCCCTTGGCGGCGCGCTGGTCCGCAACGACGCCAACTGTACGCTCTCCGAGGGCTCCGAGGGCACCCT
CAATGGCCTCTACATCGTCAATGGCACGCAGCACGTGGATAATCACACGGCCATCGACCACCGCCAGCCCCACGCCAACA
GCCACGAGCTCTACAAAGGCATCCTCGACGGCAAATCGCACGCGGTCTTCAACGGTAAAATTTTTGTTCGCAAGGACGCC
CAGAAGACCGATTCCAAACAGACCAACAAAAACCTTGTACTCTCCGACGACGCCGTGGTGGACACCAAACCGGAGTTGCA
AATCCTGGCCGACGACGTGCGCTGCACTCACGGAGCGACAATCGGCCAACTCGATGCGGAAAGCCTCTTCTACCTCCAAT
CGCGCGGCATCGGCAAAGAGGACGCCCGAAACCTTCTGGTCTTCGCCTTCGCGCAGGACGTGGTCGATCGCATCAAAGTG
CAGTCACTACGGGATTCGCTGGAAAAAATCCTGTTCGAGAAATTCCATGAGCACGCTGAGTAG

Upstream 100 bases:

>100_bases
GCCGCATCGTCAAATCCGGCGGCAAGGAACTCGCGCTCGAACTCGAAGCCGAAGGCTACGAAGGCCTGGGCCTGCATGAT
GAGCCGGAGGCGGTCGGAAG

Downstream 100 bases:

>100_bases
CACCCCTACCGCCGCAAGTTTCGACGTGGAGAAGATCCGCGAGGATTTCCCCGTCCTCAAGCAGAAGGTCCACGGCAAGC
CGCTTGTCTATCTCGATAGC

Product: Iron-regulated ABC transporter permease SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTAVSEQTGAWLEQFTNQPAAPAWLQPLRDNAFRRFAELGFPTIHNEEWRFTNIAPIARTKFAPGRTGEVATKLAKGPIQ
LVFANGHLLTRPETLPAGLQAGGFADDPAAIEKHLGKYASFDENAFVALNTAMTQDGALIRVARGAVIAEPIELFYLTST
AATPIATHPRALILIGENAQCSIVERYQGAGEGAYFTNAVTEIVVGEGAVVDHYKVQQETLAAYHVSTIQAELGRSSVFA
SHSIALGGALVRNDANCTLSEGSEGTLNGLYIVNGTQHVDNHTAIDHRQPHANSHELYKGILDGKSHAVFNGKIFVRKDA
QKTDSKQTNKNLVLSDDAVVDTKPELQILADDVRCTHGATIGQLDAESLFYLQSRGIGKEDARNLLVFAFAQDVVDRIKV
QSLRDSLEKILFEKFHEHAE

Sequences:

>Translated_420_residues
MTAVSEQTGAWLEQFTNQPAAPAWLQPLRDNAFRRFAELGFPTIHNEEWRFTNIAPIARTKFAPGRTGEVATKLAKGPIQ
LVFANGHLLTRPETLPAGLQAGGFADDPAAIEKHLGKYASFDENAFVALNTAMTQDGALIRVARGAVIAEPIELFYLTST
AATPIATHPRALILIGENAQCSIVERYQGAGEGAYFTNAVTEIVVGEGAVVDHYKVQQETLAAYHVSTIQAELGRSSVFA
SHSIALGGALVRNDANCTLSEGSEGTLNGLYIVNGTQHVDNHTAIDHRQPHANSHELYKGILDGKSHAVFNGKIFVRKDA
QKTDSKQTNKNLVLSDDAVVDTKPELQILADDVRCTHGATIGQLDAESLFYLQSRGIGKEDARNLLVFAFAQDVVDRIKV
QSLRDSLEKILFEKFHEHAE
>Mature_419_residues
TAVSEQTGAWLEQFTNQPAAPAWLQPLRDNAFRRFAELGFPTIHNEEWRFTNIAPIARTKFAPGRTGEVATKLAKGPIQL
VFANGHLLTRPETLPAGLQAGGFADDPAAIEKHLGKYASFDENAFVALNTAMTQDGALIRVARGAVIAEPIELFYLTSTA
ATPIATHPRALILIGENAQCSIVERYQGAGEGAYFTNAVTEIVVGEGAVVDHYKVQQETLAAYHVSTIQAELGRSSVFAS
HSIALGGALVRNDANCTLSEGSEGTLNGLYIVNGTQHVDNHTAIDHRQPHANSHELYKGILDGKSHAVFNGKIFVRKDAQ
KTDSKQTNKNLVLSDDAVVDTKPELQILADDVRCTHGATIGQLDAESLFYLQSRGIGKEDARNLLVFAFAQDVVDRIKVQ
SLRDSLEKILFEKFHEHAE

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=377, Percent_Identity=31.0344827586207, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI87081955, Length=305, Percent_Identity=24.2622950819672, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45691; Mature: 45560

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVSEQTGAWLEQFTNQPAAPAWLQPLRDNAFRRFAELGFPTIHNEEWRFTNIAPIART
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHC
KFAPGRTGEVATKLAKGPIQLVFANGHLLTRPETLPAGLQAGGFADDPAAIEKHLGKYAS
CCCCCCCCHHHHHHCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
FDENAFVALNTAMTQDGALIRVARGAVIAEPIELFYLTSTAATPIATHPRALILIGENAQ
CCCCEEEEEEEEECCCCCEEEEECCCEEECCEEEEEEECCCCCCCCCCCEEEEEECCCCC
CSIVERYQGAGEGAYFTNAVTEIVVGEGAVVDHYKVQQETLAAYHVSTIQAELGRSSVFA
EEHHHHHCCCCCCCCHHHHHHHHEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCHHHHC
SHSIALGGALVRNDANCTLSEGSEGTLNGLYIVNGTQHVDNHTAIDHRQPHANSHELYKG
CCCCEECCEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
ILDGKSHAVFNGKIFVRKDAQKTDSKQTNKNLVLSDDAVVDTKPELQILADDVRCTHGAT
HHCCCCEEEEECEEEEECCCCCCCCCCCCCCEEEECCCEECCCCCEEEEECCCEECCCCE
IGQLDAESLFYLQSRGIGKEDARNLLVFAFAQDVVDRIKVQSLRDSLEKILFEKFHEHAE
ECCCCHHHHHEEHHCCCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAVSEQTGAWLEQFTNQPAAPAWLQPLRDNAFRRFAELGFPTIHNEEWRFTNIAPIART
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHC
KFAPGRTGEVATKLAKGPIQLVFANGHLLTRPETLPAGLQAGGFADDPAAIEKHLGKYAS
CCCCCCCCHHHHHHCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
FDENAFVALNTAMTQDGALIRVARGAVIAEPIELFYLTSTAATPIATHPRALILIGENAQ
CCCCEEEEEEEEECCCCCEEEEECCCEEECCEEEEEEECCCCCCCCCCCEEEEEECCCCC
CSIVERYQGAGEGAYFTNAVTEIVVGEGAVVDHYKVQQETLAAYHVSTIQAELGRSSVFA
EEHHHHHCCCCCCCCHHHHHHHHEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCHHHHC
SHSIALGGALVRNDANCTLSEGSEGTLNGLYIVNGTQHVDNHTAIDHRQPHANSHELYKG
CCCCEECCEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
ILDGKSHAVFNGKIFVRKDAQKTDSKQTNKNLVLSDDAVVDTKPELQILADDVRCTHGAT
HHCCCCEEEEECEEEEECCCCCCCCCCCCCCEEEECCCEECCCCCEEEEECCCEECCCCE
IGQLDAESLFYLQSRGIGKEDARNLLVFAFAQDVVDRIKVQSLRDSLEKILFEKFHEHAE
ECCCCHHHHHEEHHCCCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]