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The map label for this gene is whiG [H]

Identifier: 116626504

GI number: 116626504

Start: 9357334

End: 9358089

Strand: Direct

Name: whiG [H]

Synonym: Acid_7467

Alternate gene names: 116626504

Gene position: 9357334-9358089 (Clockwise)

Preceding gene: 116626503

Following gene: 116626505

Centisome position: 93.9

GC content: 59.26

Gene sequence:

>756_bases
ATGTATGGCTACTCGGTATCCGGTGAGATGAGGGAAGACGAGCGAGAGCGCCTGATTCTGGAGCATTTGCCGCAAGTGAG
ACTGATCGCGCGGCGCATCCAGGAACGTTTGCCAGAGAGTATCAGCCTGGATGACCTGGTCTCCACCGGTGTGCTGGGAC
TGATCTCGGCGATCGACAATTTCGACGCGAGCCACAACGTCAAACTGAAGACCTATGCGGAGTATAAGATCCGCGGCGCA
ATCCTGGACAGTTTGCGCGGCCTGGACTGGGCGCCGCGCCAGAAGCGGCGCAAGTCGAAGCAGATCGAGGCGGCGATTGC
AGTTGCCGAACAGCGCCTCCACGCATCTCCGGGAGAAGAGGAAATCGCCGGCGAACTGGGCATCACGGTGGATGAGTACC
ACGAATGGCTGGTCGAGATTCGCGGTCTCAACGTGGCAAGCCTGGAATACGCCGGCAATGAACAGGGGCGGGACCTTCTC
CATTACATTCCGGACGGCTCCGACAACCTGCCGTCAACGCTGCTGGAGCGCTCTGAACTGGAGCGTTTGCTGGCATCGAG
CATCGATGGCATTCCTGCCATCGAACGCACCGTTCTGAGCCTTTACTTTCACGAGGAGCTTACGCTTAGGGAAATCGCGC
AGGTCGTCAATCTGCATGAATCGCGCATTTCGCAATTGAAATCCCAGGCGATTCTACGCCTGCGCGGGCAGATGGCCTCG
CAGTGGCCGGCGGCGCGCGGGATGGTGAATGCATGA

Upstream 100 bases:

>100_bases
GCGGCCAGTAGCGAACGCCTGCTGGACCTGGTGCTGGCTGGACGCAGCAGCAAGGCCAGGTCGGCGGCGTAGGAAGAGAG
TTGGCGATGAGTGGAAGCGT

Downstream 100 bases:

>100_bases
GTCCGGTGGGAACGCCCGGACAGCTGCCCGAGGTCGTACGGGGACTGCTCGACCAGTGGGTGGCGGGGCTGGCGCAGGTC
GTGGAATCCATGGCCGATCA

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MYGYSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDNFDASHNVKLKTYAEYKIRGA
ILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEEEIAGELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLL
HYIPDGSDNLPSTLLERSELERLLASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMAS
QWPAARGMVNA

Sequences:

>Translated_251_residues
MYGYSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDNFDASHNVKLKTYAEYKIRGA
ILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEEEIAGELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLL
HYIPDGSDNLPSTLLERSELERLLASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMAS
QWPAARGMVNA
>Mature_251_residues
MYGYSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDNFDASHNVKLKTYAEYKIRGA
ILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEEEIAGELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLL
HYIPDGSDNLPSTLLERSELERLLASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMAS
QWPAARGMVNA

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=237, Percent_Identity=37.5527426160338, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789098, Length=237, Percent_Identity=27.0042194092827, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28315; Mature: 28315

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGYSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDN
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
FDASHNVKLKTYAEYKIRGAILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEE
CCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EIAGELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLLHYIPDGSDNLPSTLLERSEL
HHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
ERLLASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMAS
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWPAARGMVNA
HCHHHCCCCCC
>Mature Secondary Structure
MYGYSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDN
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
FDASHNVKLKTYAEYKIRGAILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEE
CCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EIAGELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLLHYIPDGSDNLPSTLLERSEL
HHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
ERLLASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMAS
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWPAARGMVNA
HCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]