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The map label for this gene is yprB [H]

Identifier: 116626401

GI number: 116626401

Start: 9239328

End: 9240575

Strand: Direct

Name: yprB [H]

Synonym: Acid_7363

Alternate gene names: 116626401

Gene position: 9239328-9240575 (Clockwise)

Preceding gene: 116626398

Following gene: 116626406

Centisome position: 92.71

GC content: 65.22

Gene sequence:

>1248_bases
ATGGAGGACATCCAGGAACAACTCGCCGCCCTTCGCCGCCGCATCGCGCGCGTCGATCGAAAGTACGCGACTCCCGCTCC
CCCGGCTCGCCCACCACTCCGCCCCGGCGGCGAGTTCATCGAGGAATTGCTCAGCGGAGAAGTCGTCACCACCCCCTTCG
GCCAGCACTTCGAAACCGAAAAGCTCTGGGAGAATCACCGCCGCCACGGCAGCGTCTACATCTCCGACCTCGCCGAACTG
CCCGAGGACCTGCTTGACCCGCTCTCCGATGGCGCCGTTCCCGCCAGCCATCCCACCAAGTGGGCCTTCCTCGATACCGA
AACTACCGGGCTCGCGGGCGGCACCGGCACTTACGCCTTCCTGATCGGCGTCGGCTCCATCGATTCCGAGGGCTTCCGCC
TGCGCCAGTTCTTCATGCGCGATTACGACGAAGAGGCCTCCCAGCTCCACCGCCTCTCCGAATACCTGGCGCAATTCGAC
GTGCTCATCACCTACAACGGCAAGTCCTACGACCAGCCGCTGCTCGAGACCCGCTTCCGCATGTCGCGCGCCCGCCACCC
CTTCGACCGCATGCAGCACCTGGACCTGCTCTTCGGCGCCCGCCGCCTATGGAAGCTTCGCCTGGAAAGCTGCCGCCTGG
TGGAGTTGGAACATCGCATTCTCGGCGTGGAACGCCAGGGCGACCTGCCCGGCGAAATGATTCCCTACGTCTATTTCGAT
TTCCTGCGCAGCCAGAAGGCCTTTCAGGTGGTGCCCATCTTCCACCACAACGCGCTCGATATCCTCTCGCTCGCCTGCCT
GACAGCGATCGTCCCTTTCGCCTTCCGCTCTCCGGCAGACGCCGCGTTCGGACACGGCGCCGACCACATCGGCCTCGCCC
GCTGGCTGCTCCAGGCCGAACGTCAGGAGGAAGCGCTTCGCCTCTTCCGCCGCGCCCTGGAAATGGGCCTTCCGGACGAC
CTGCTCTTCCGCACCATGTGGGATGTCGCGCTGCTCGAGCGCCGCATGGGCCGCCAGGATGCCGCCCTCGCCATGGTCAC
CGAGCTCACCGCCTCGCGCAATCCCTATCGCGTGAAGGCCTTCGCGGAACTGGCCAAGCACTACGAACATCGCGAAAAGA
ACTACGCGATGGCGCTCGAGATGACGCTCAGCGCGCTCGCCATCGAAGATACCCCCGAGATCCGCCGCCGCGAACAGCGC
CTCAAACTCCGCCTCACCCGCACCGTTATGCCCAAGCTTGCGCTTTAG

Upstream 100 bases:

>100_bases
CCGCGACAGGAACAACTGCGCTTTGAATCACCCTCTGAATATAACAAGCGGATTTATCCACCCGCCGACCTTGCTATATT
AGGCAAAGAAAAAGCGAAGC

Downstream 100 bases:

>100_bases
ATTATTTTCTTCCCCTGCCCCGCCGTATTCACCGCCACCGGGCCGTTCTCCGTCGAAAGCCGGATGGTGTCGTTGCTGCC
GTTCATCTGAATCGTGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MEDIQEQLAALRRRIARVDRKYATPAPPARPPLRPGGEFIEELLSGEVVTTPFGQHFETEKLWENHRRHGSVYISDLAEL
PEDLLDPLSDGAVPASHPTKWAFLDTETTGLAGGTGTYAFLIGVGSIDSEGFRLRQFFMRDYDEEASQLHRLSEYLAQFD
VLITYNGKSYDQPLLETRFRMSRARHPFDRMQHLDLLFGARRLWKLRLESCRLVELEHRILGVERQGDLPGEMIPYVYFD
FLRSQKAFQVVPIFHHNALDILSLACLTAIVPFAFRSPADAAFGHGADHIGLARWLLQAERQEEALRLFRRALEMGLPDD
LLFRTMWDVALLERRMGRQDAALAMVTELTASRNPYRVKAFAELAKHYEHREKNYAMALEMTLSALAIEDTPEIRRREQR
LKLRLTRTVMPKLAL

Sequences:

>Translated_415_residues
MEDIQEQLAALRRRIARVDRKYATPAPPARPPLRPGGEFIEELLSGEVVTTPFGQHFETEKLWENHRRHGSVYISDLAEL
PEDLLDPLSDGAVPASHPTKWAFLDTETTGLAGGTGTYAFLIGVGSIDSEGFRLRQFFMRDYDEEASQLHRLSEYLAQFD
VLITYNGKSYDQPLLETRFRMSRARHPFDRMQHLDLLFGARRLWKLRLESCRLVELEHRILGVERQGDLPGEMIPYVYFD
FLRSQKAFQVVPIFHHNALDILSLACLTAIVPFAFRSPADAAFGHGADHIGLARWLLQAERQEEALRLFRRALEMGLPDD
LLFRTMWDVALLERRMGRQDAALAMVTELTASRNPYRVKAFAELAKHYEHREKNYAMALEMTLSALAIEDTPEIRRREQR
LKLRLTRTVMPKLAL
>Mature_415_residues
MEDIQEQLAALRRRIARVDRKYATPAPPARPPLRPGGEFIEELLSGEVVTTPFGQHFETEKLWENHRRHGSVYISDLAEL
PEDLLDPLSDGAVPASHPTKWAFLDTETTGLAGGTGTYAFLIGVGSIDSEGFRLRQFFMRDYDEEASQLHRLSEYLAQFD
VLITYNGKSYDQPLLETRFRMSRARHPFDRMQHLDLLFGARRLWKLRLESCRLVELEHRILGVERQGDLPGEMIPYVYFD
FLRSQKAFQVVPIFHHNALDILSLACLTAIVPFAFRSPADAAFGHGADHIGLARWLLQAERQEEALRLFRRALEMGLPDD
LLFRTMWDVALLERRMGRQDAALAMVTELTASRNPYRVKAFAELAKHYEHREKNYAMALEMTLSALAIEDTPEIRRREQR
LKLRLTRTVMPKLAL

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47785; Mature: 47785

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDIQEQLAALRRRIARVDRKYATPAPPARPPLRPGGEFIEELLSGEVVTTPFGQHFETE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCHH
KLWENHRRHGSVYISDLAELPEDLLDPLSDGAVPASHPTKWAFLDTETTGLAGGTGTYAF
HHHHHHHHCCCEEHHHHHHCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEE
LIGVGSIDSEGFRLRQFFMRDYDEEASQLHRLSEYLAQFDVLITYNGKSYDQPLLETRFR
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHH
MSRARHPFDRMQHLDLLFGARRLWKLRLESCRLVELEHRILGVERQGDLPGEMIPYVYFD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
FLRSQKAFQVVPIFHHNALDILSLACLTAIVPFAFRSPADAAFGHGADHIGLARWLLQAE
HHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHH
RQEEALRLFRRALEMGLPDDLLFRTMWDVALLERRMGRQDAALAMVTELTASRNPYRVKA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEHHH
FAELAKHYEHREKNYAMALEMTLSALAIEDTPEIRRREQRLKLRLTRTVMPKLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEDIQEQLAALRRRIARVDRKYATPAPPARPPLRPGGEFIEELLSGEVVTTPFGQHFETE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCHH
KLWENHRRHGSVYISDLAELPEDLLDPLSDGAVPASHPTKWAFLDTETTGLAGGTGTYAF
HHHHHHHHCCCEEHHHHHHCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEE
LIGVGSIDSEGFRLRQFFMRDYDEEASQLHRLSEYLAQFDVLITYNGKSYDQPLLETRFR
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHH
MSRARHPFDRMQHLDLLFGARRLWKLRLESCRLVELEHRILGVERQGDLPGEMIPYVYFD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
FLRSQKAFQVVPIFHHNALDILSLACLTAIVPFAFRSPADAAFGHGADHIGLARWLLQAE
HHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHH
RQEEALRLFRRALEMGLPDDLLFRTMWDVALLERRMGRQDAALAMVTELTASRNPYRVKA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEHHH
FAELAKHYEHREKNYAMALEMTLSALAIEDTPEIRRREQRLKLRLTRTVMPKLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]