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The map label for this gene is dapB [H]

Identifier: 116626023

GI number: 116626023

Start: 8769035

End: 8769724

Strand: Reverse

Name: dapB [H]

Synonym: Acid_6981

Alternate gene names: 116626023

Gene position: 8769724-8769035 (Counterclockwise)

Preceding gene: 116626024

Following gene: 116626022

Centisome position: 88.0

GC content: 62.75

Gene sequence:

>690_bases
ATGCGTAAGCTGGCCATCGTAGGCTACGGGAAGATGGGCAGGTTGATTGAGCAGCTTGCGCCGCAGTACGGTTTCGAGGT
CGCGCTTAAGCTGGATGAATTCAACAACGCGGGCGGCGAAGGGCTGACGCAGGAGAATTTTGCGGGGATCGATGTCGCGA
TCGAGTTCTCGATTCCGGCGGCGGTCGCTGGCAATGTGAGGGGTGTCGCGGCCCACGGCGTGCCGGTGGTGGTGGGAACT
ACTGGCTGGCTGGGACATTTGGATGAAGTGAAGCGCGCGGTGGAGACGACCGGTACGGGACTGGTGTGGAGTCCCAACTT
CTCGATCGGGGTGAACGTGTTCATGCGGCTGGTGGCGGAGGCCGCGCGGCTGATGGAAGCGGAGCCGGAGTACGGCTCGT
GGGCCTGGGAGATTCACCACTCGGCGAAGAAAGACGCGCCATCCGGTACCCTGCTGAAGCTGGTGGACGAGATGAAGAAG
GCGGGCTACACGCGCAACATCGACGTGGGGTCGAACCGTGCGGGCGCGATTCCGGGAACGCACGAAATCGGTTTCGACAG
TGCCGCGGATACGATCACGCTGCGGCACACGGCGCGCAGCCGCGAAGGCTTCGCGCGCGGGGCGCTCAAAGCGGCGCAGT
GGATCGTGGGGAAAAAGGGCTTTTACGAGTTCAGTGAGATTGCGTTTTAG

Upstream 100 bases:

>100_bases
GTGATCGCCGAGACCGATCTGGTGAACGCGGTGAGGCTGCTGCACGAGGAATTTTTCGCGACGCTCGATCCCAATGTGTT
CGAGCGCAAAGAGGCTGTGC

Downstream 100 bases:

>100_bases
GCCAGGAAGAGAATGGGCCGCGGATGAACGCGGATGAACGCAGATGAAAACGAGGGCGGGAGGTGGTACATGTTTACCGG
ATGCGGGACAGCGCTAGTCA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MRKLAIVGYGKMGRLIEQLAPQYGFEVALKLDEFNNAGGEGLTQENFAGIDVAIEFSIPAAVAGNVRGVAAHGVPVVVGT
TGWLGHLDEVKRAVETTGTGLVWSPNFSIGVNVFMRLVAEAARLMEAEPEYGSWAWEIHHSAKKDAPSGTLLKLVDEMKK
AGYTRNIDVGSNRAGAIPGTHEIGFDSAADTITLRHTARSREGFARGALKAAQWIVGKKGFYEFSEIAF

Sequences:

>Translated_229_residues
MRKLAIVGYGKMGRLIEQLAPQYGFEVALKLDEFNNAGGEGLTQENFAGIDVAIEFSIPAAVAGNVRGVAAHGVPVVVGT
TGWLGHLDEVKRAVETTGTGLVWSPNFSIGVNVFMRLVAEAARLMEAEPEYGSWAWEIHHSAKKDAPSGTLLKLVDEMKK
AGYTRNIDVGSNRAGAIPGTHEIGFDSAADTITLRHTARSREGFARGALKAAQWIVGKKGFYEFSEIAF
>Mature_229_residues
MRKLAIVGYGKMGRLIEQLAPQYGFEVALKLDEFNNAGGEGLTQENFAGIDVAIEFSIPAAVAGNVRGVAAHGVPVVVGT
TGWLGHLDEVKRAVETTGTGLVWSPNFSIGVNVFMRLVAEAARLMEAEPEYGSWAWEIHHSAKKDAPSGTLLKLVDEMKK
AGYTRNIDVGSNRAGAIPGTHEIGFDSAADTITLRHTARSREGFARGALKAAQWIVGKKGFYEFSEIAF

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=267, Percent_Identity=29.5880149812734, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 24604; Mature: 24604

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLAIVGYGKMGRLIEQLAPQYGFEVALKLDEFNNAGGEGLTQENFAGIDVAIEFSIPA
CCEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCH
AVAGNVRGVAAHGVPVVVGTTGWLGHLDEVKRAVETTGTGLVWSPNFSIGVNVFMRLVAE
HHCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
AARLMEAEPEYGSWAWEIHHSAKKDAPSGTLLKLVDEMKKAGYTRNIDVGSNRAGAIPGT
HHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
HEIGFDSAADTITLRHTARSREGFARGALKAAQWIVGKKGFYEFSEIAF
CCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MRKLAIVGYGKMGRLIEQLAPQYGFEVALKLDEFNNAGGEGLTQENFAGIDVAIEFSIPA
CCEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCH
AVAGNVRGVAAHGVPVVVGTTGWLGHLDEVKRAVETTGTGLVWSPNFSIGVNVFMRLVAE
HHCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
AARLMEAEPEYGSWAWEIHHSAKKDAPSGTLLKLVDEMKKAGYTRNIDVGSNRAGAIPGT
HHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
HEIGFDSAADTITLRHTARSREGFARGALKAAQWIVGKKGFYEFSEIAF
CCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA