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The map label for this gene is rfbC [H]

Identifier: 116625989

GI number: 116625989

Start: 8728610

End: 8730535

Strand: Reverse

Name: rfbC [H]

Synonym: Acid_6947

Alternate gene names: 116625989

Gene position: 8730535-8728610 (Counterclockwise)

Preceding gene: 116625990

Following gene: 116625988

Centisome position: 87.61

GC content: 58.46

Gene sequence:

>1926_bases
ATGCGCACCCCGGAAGCCGAAGTCAAATTCCGGAGATCCTGCGACGCTCCGTGGACTGCGGTGAATTCCACTGGCCTGAG
TGCCGACAGCGTGCTGTTGTATGCGCTGCAGTCGGTTGATTGGCGACTCGAACGTCTTGAAATTAGCTTCCTTCGCCTGG
TCAGGTTATGGACTTGGGCCACACGGCTGTATCGCCGGTTCGGCCACATGCTACTCCGGACGCCCGTGGCCAGGATCTGC
CATAAGCTGATGGGTCACCTGGCTGCCGATGAGAAATACCGCCGCTGGTTCCTGCAGCATCAAGCGACCGATCCGTATTC
CGATTCCGGAATCGCCGAGGCAATCGTTCGATCCCAAGGCCCTCTCGTCTCGTTAATTATGCCGGTTTACCAGCCGAACC
TTGAATGGCTGATGGCCGCCGTGAAATCGGTCCGCACGCAAACCTACGACGACTGGCAACTGTTGATCGTCCTTGACGGC
GGCCCAAGCCGGGAAGTGCTCAATTACCTCCAACCCCTTGCGTCCGAGGATCCGCGTATTCAATGCCTTTTTAGCGACCG
GGGCGGGATCTCCTCTACACTCAACCTCGGACTGAGTGTCTGTTCCGGCGGGTACGCGGCGTTTATCGATCAGGACGATA
CTCTAGAGCCGACGGCCCTCGCCCATGTGGCTGCGGCGATTACGCATGATGAGCCGGACATCATTTATACCGACGAGGAT
TACGTCGATGAGCGTGGCGCCGCTCATCTGCCGCTTTTTAAGCCTGCCTGGTCGCCCGCACTTCTGTTCTCTTGCATGTA
TTTTGGCCATCTCATCGTCGTGAACACTGAACGAGCACGAAAGATTGGCGGGTTTCGAACTGCTTACGACGGTGCACAGG
ACTACGACTTCGTTCTGCGCCTGACCGATGAGGACGCTAGAGTGGTTCACATTCCCCGCGTCCTCTACCATTGGCGCCGG
CATCCGGGTTCGACCGCCGCGAATCCTGGCGCGAAGTCGTATTCTCATCCTGCCGGGCGGAATGCGCTCCAGGACACTCT
CGATCGTCGCGGGCTCAATGCCGTCGTTTGCGACGGACCGTGTTCTAACAGCTACCGGCTGTCTCACGAATTATCTGCCG
AGGATTCAGCGGCGATCATCGTTCCGACCCGGAATTCGAAACTGCTCTCACGCCTCTTGGACTCGATGCCTGAAGTGAAG
GGCGGGCTCCGCCGGGAAGTGCACGTCATCCTGCACTGCCAGGGGACTTCGGAAGACGAGAGGATAGCCGCGGTCGCCAG
GAGGTTCGGCGCGCGCATAACCGAGTATCGCGGACCTTTTAATTTTGCCCTGATGAACAACCTGGCTGCCGCCCGCCTTT
CGAATCCGTATCTCGTCCTCATGAACGACGACGTCGTGATCGGCAGCGATCACTGGCTCGAAGATTTGTGCGCACCATTC
ATTCGCCCTGAGGTCGGAGTTGTTGGTGCTCGCTTGCTCTACCCGGACGGCACGATCGAGCACTGCGGTGTGGTGACGGG
TATCGGCGAGGGGGTCGGCCATTCCGGGCGGTTTGAGGTCGGCAGTCCATTCTGGCCCTGGCTCGAACTGACGCGCAATG
TCTCTGCGGTTACCGGAGCGTGCATGGCGATTCGACGCACCGTGTTTGAGCGGATCGGCGGATTCGATACTCGTTTCTTC
AATAACTACAATGATGTGGACTTATGTTTGAGGGCCCAAAGCGCCGGATTCGAGGTGGTTCTCAGTGCCGGCTCCAACCT
AAGGCACGATGGCGGGAGAACCCGCGAGGCCGGCACCGCTTTGCGCGAAAGAATCGACTTCTGGACGCAATGGGGAACTG
TGCTTGCGGAAGTCGATTATTTCTACAGCCCAAATCTGTCGCGACGCCTCGAAACTATTGATCTGTCGGCACTGTCCCTG
CAATGA

Upstream 100 bases:

>100_bases
ATTGACCTCAGGAGACAACCGCAATGGTATCGGGGAGCCACTGAGCCTCACGCTCACTCACGATCGTGCATGGAGAAGTT
CCCGGTGCGGGCCGGTTGCA

Downstream 100 bases:

>100_bases
GTTCGGATGGATAGGGAGGAACTAACAAGATAGTGTCGATTCAATTGTTCGTGCCCAGTTTTCGAATCGATGAGTGCATC
AAGGGTATTCGGGAGTGCCT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MRTPEAEVKFRRSCDAPWTAVNSTGLSADSVLLYALQSVDWRLERLEISFLRLVRLWTWATRLYRRFGHMLLRTPVARIC
HKLMGHLAADEKYRRWFLQHQATDPYSDSGIAEAIVRSQGPLVSLIMPVYQPNLEWLMAAVKSVRTQTYDDWQLLIVLDG
GPSREVLNYLQPLASEDPRIQCLFSDRGGISSTLNLGLSVCSGGYAAFIDQDDTLEPTALAHVAAAITHDEPDIIYTDED
YVDERGAAHLPLFKPAWSPALLFSCMYFGHLIVVNTERARKIGGFRTAYDGAQDYDFVLRLTDEDARVVHIPRVLYHWRR
HPGSTAANPGAKSYSHPAGRNALQDTLDRRGLNAVVCDGPCSNSYRLSHELSAEDSAAIIVPTRNSKLLSRLLDSMPEVK
GGLRREVHVILHCQGTSEDERIAAVARRFGARITEYRGPFNFALMNNLAAARLSNPYLVLMNDDVVIGSDHWLEDLCAPF
IRPEVGVVGARLLYPDGTIEHCGVVTGIGEGVGHSGRFEVGSPFWPWLELTRNVSAVTGACMAIRRTVFERIGGFDTRFF
NNYNDVDLCLRAQSAGFEVVLSAGSNLRHDGGRTREAGTALRERIDFWTQWGTVLAEVDYFYSPNLSRRLETIDLSALSL
Q

Sequences:

>Translated_641_residues
MRTPEAEVKFRRSCDAPWTAVNSTGLSADSVLLYALQSVDWRLERLEISFLRLVRLWTWATRLYRRFGHMLLRTPVARIC
HKLMGHLAADEKYRRWFLQHQATDPYSDSGIAEAIVRSQGPLVSLIMPVYQPNLEWLMAAVKSVRTQTYDDWQLLIVLDG
GPSREVLNYLQPLASEDPRIQCLFSDRGGISSTLNLGLSVCSGGYAAFIDQDDTLEPTALAHVAAAITHDEPDIIYTDED
YVDERGAAHLPLFKPAWSPALLFSCMYFGHLIVVNTERARKIGGFRTAYDGAQDYDFVLRLTDEDARVVHIPRVLYHWRR
HPGSTAANPGAKSYSHPAGRNALQDTLDRRGLNAVVCDGPCSNSYRLSHELSAEDSAAIIVPTRNSKLLSRLLDSMPEVK
GGLRREVHVILHCQGTSEDERIAAVARRFGARITEYRGPFNFALMNNLAAARLSNPYLVLMNDDVVIGSDHWLEDLCAPF
IRPEVGVVGARLLYPDGTIEHCGVVTGIGEGVGHSGRFEVGSPFWPWLELTRNVSAVTGACMAIRRTVFERIGGFDTRFF
NNYNDVDLCLRAQSAGFEVVLSAGSNLRHDGGRTREAGTALRERIDFWTQWGTVLAEVDYFYSPNLSRRLETIDLSALSL
Q
>Mature_641_residues
MRTPEAEVKFRRSCDAPWTAVNSTGLSADSVLLYALQSVDWRLERLEISFLRLVRLWTWATRLYRRFGHMLLRTPVARIC
HKLMGHLAADEKYRRWFLQHQATDPYSDSGIAEAIVRSQGPLVSLIMPVYQPNLEWLMAAVKSVRTQTYDDWQLLIVLDG
GPSREVLNYLQPLASEDPRIQCLFSDRGGISSTLNLGLSVCSGGYAAFIDQDDTLEPTALAHVAAAITHDEPDIIYTDED
YVDERGAAHLPLFKPAWSPALLFSCMYFGHLIVVNTERARKIGGFRTAYDGAQDYDFVLRLTDEDARVVHIPRVLYHWRR
HPGSTAANPGAKSYSHPAGRNALQDTLDRRGLNAVVCDGPCSNSYRLSHELSAEDSAAIIVPTRNSKLLSRLLDSMPEVK
GGLRREVHVILHCQGTSEDERIAAVARRFGARITEYRGPFNFALMNNLAAARLSNPYLVLMNDDVVIGSDHWLEDLCAPF
IRPEVGVVGARLLYPDGTIEHCGVVTGIGEGVGHSGRFEVGSPFWPWLELTRNVSAVTGACMAIRRTVFERIGGFDTRFF
NNYNDVDLCLRAQSAGFEVVLSAGSNLRHDGGRTREAGTALRERIDFWTQWGTVLAEVDYFYSPNLSRRLETIDLSALSL
Q

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788372, Length=212, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 71717; Mature: 71717

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTPEAEVKFRRSCDAPWTAVNSTGLSADSVLLYALQSVDWRLERLEISFLRLVRLWTWA
CCCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLYRRFGHMLLRTPVARICHKLMGHLAADEKYRRWFLQHQATDPYSDSGIAEAIVRSQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
PLVSLIMPVYQPNLEWLMAAVKSVRTQTYDDWQLLIVLDGGPSREVLNYLQPLASEDPRI
CCEEHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCE
QCLFSDRGGISSTLNLGLSVCSGGYAAFIDQDDTLEPTALAHVAAAITHDEPDIIYTDED
EEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCH
YVDERGAAHLPLFKPAWSPALLFSCMYFGHLIVVNTERARKIGGFRTAYDGAQDYDFVLR
HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHCCCCHHHCCCCCCCEEEEE
LTDEDARVVHIPRVLYHWRRHPGSTAANPGAKSYSHPAGRNALQDTLDRRGLNAVVCDGP
EECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCC
CSNSYRLSHELSAEDSAAIIVPTRNSKLLSRLLDSMPEVKGGLRREVHVILHCQGTSEDE
CCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHCHHHHCCCCEEEEEEEEECCCCCHH
RIAAVARRFGARITEYRGPFNFALMNNLAAARLSNPYLVLMNDDVVIGSDHWLEDLCAPF
HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCEEECCCHHHHHHHHHH
IRPEVGVVGARLLYPDGTIEHCGVVTGIGEGVGHSGRFEVGSPFWPWLELTRNVSAVTGA
HCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHH
CMAIRRTVFERIGGFDTRFFNNYNDVDLCLRAQSAGFEVVLSAGSNLRHDGGRTREAGTA
HHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHH
LRERIDFWTQWGTVLAEVDYFYSPNLSRRLETIDLSALSLQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECEEEECC
>Mature Secondary Structure
MRTPEAEVKFRRSCDAPWTAVNSTGLSADSVLLYALQSVDWRLERLEISFLRLVRLWTWA
CCCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLYRRFGHMLLRTPVARICHKLMGHLAADEKYRRWFLQHQATDPYSDSGIAEAIVRSQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
PLVSLIMPVYQPNLEWLMAAVKSVRTQTYDDWQLLIVLDGGPSREVLNYLQPLASEDPRI
CCEEHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCE
QCLFSDRGGISSTLNLGLSVCSGGYAAFIDQDDTLEPTALAHVAAAITHDEPDIIYTDED
EEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCH
YVDERGAAHLPLFKPAWSPALLFSCMYFGHLIVVNTERARKIGGFRTAYDGAQDYDFVLR
HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHCCCCHHHCCCCCCCEEEEE
LTDEDARVVHIPRVLYHWRRHPGSTAANPGAKSYSHPAGRNALQDTLDRRGLNAVVCDGP
EECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCC
CSNSYRLSHELSAEDSAAIIVPTRNSKLLSRLLDSMPEVKGGLRREVHVILHCQGTSEDE
CCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHCHHHHCCCCEEEEEEEEECCCCCHH
RIAAVARRFGARITEYRGPFNFALMNNLAAARLSNPYLVLMNDDVVIGSDHWLEDLCAPF
HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCEEECCCHHHHHHHHHH
IRPEVGVVGARLLYPDGTIEHCGVVTGIGEGVGHSGRFEVGSPFWPWLELTRNVSAVTGA
HCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHH
CMAIRRTVFERIGGFDTRFFNNYNDVDLCLRAQSAGFEVVLSAGSNLRHDGGRTREAGTA
HHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHH
LRERIDFWTQWGTVLAEVDYFYSPNLSRRLETIDLSALSLQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]