Click here to switch to the map view.

The map label for this gene is rfbD [H]

Identifier: 116625986

GI number: 116625986

Start: 8726142

End: 8726930

Strand: Reverse

Name: rfbD [H]

Synonym: Acid_6944

Alternate gene names: 116625986

Gene position: 8726930-8726142 (Counterclockwise)

Preceding gene: 116625987

Following gene: 116625985

Centisome position: 87.57

GC content: 54.37

Gene sequence:

>789_bases
ATGCATCGGTTACTGACAGATAGTTGGCAGGCCCTTCGCGTCTGGCGCGTTTGGCTGTTCCTGGGTGTCCAGGACGTCAA
GGCGCGATTCCGGCGCTCGGCGATCGGCCCTGTCTGGATTTTCTTGAATATGTCCTTGTTCGTCGCTGGGGCTGGGCTTC
TTTACGGCGTGATGATCAACCAGCCGATGAAGATACTTCTGCCCTATCTGGTCACCGGTTTTACCCTGTGGGCCATGGTG
GTCAGTTCGCTGACTGAATCCGGCTGGGCGTTTGTGAACGCCGAAGGATATATCAAGCAGTTCTGCTATCCGAAGCAGAT
TTACCTCCTGCGGACCTTGGTTTCCAGCACGATTATCATGCTGATTACTCTTCCAGCTATCATTCCCATCCAACTGTACT
TCGGAAGCTTCTCAATTGTCGGCTGGCTGCTTGCGGTGCCAGGTCTGCTTCTTTTGCTGCTGGCCGCATTGGGCCACATC
ACGTTGTGCGCTTATCTGGGAGTTCGTTTTCGGGATCTGCCACATGCGGCCGGTGGACTTCTGCAGGTGGCCTTTTTCGT
TACGCCGGTCATGTTTCCGGCAAAAGTGTTGCAGGATCATCACCTGGAGCTGATCTATCAGTTCAATCCCTTGTATTACA
TTCTTGAGGCTGCCCGCCATCCCATTCTGCTCGGAGAACTGGCTGCTCCGGAGATCTATGCGTTCGCGGGAGTCTATATT
CTCCTGGTCTGGGCCTTCGCCGGTCTGGTTGCCAGGTCATTGGATTCGCGAGTTGTGCTTCTGCTATGA

Upstream 100 bases:

>100_bases
TATGCGCGAAACGGCTTCCGCGAAGAAGCAAAAGCAGAGGGAATGATACGCATGGTCCGTTCGCTCAATCAGGATCTTGC
CGGGACCATCTATGCAAGCG

Downstream 100 bases:

>100_bases
CAGATATCTACCTTCGCTTGCGCGGTGTGGGGATGACATTTGAAGGGCAGATCGGCGGCCAGGACGGTTTGCAGTCCTGG
CTTCCCCGGTGCTTTGCCAA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MHRLLTDSWQALRVWRVWLFLGVQDVKARFRRSAIGPVWIFLNMSLFVAGAGLLYGVMINQPMKILLPYLVTGFTLWAMV
VSSLTESGWAFVNAEGYIKQFCYPKQIYLLRTLVSSTIIMLITLPAIIPIQLYFGSFSIVGWLLAVPGLLLLLLAALGHI
TLCAYLGVRFRDLPHAAGGLLQVAFFVTPVMFPAKVLQDHHLELIYQFNPLYYILEAARHPILLGELAAPEIYAFAGVYI
LLVWAFAGLVARSLDSRVVLLL

Sequences:

>Translated_262_residues
MHRLLTDSWQALRVWRVWLFLGVQDVKARFRRSAIGPVWIFLNMSLFVAGAGLLYGVMINQPMKILLPYLVTGFTLWAMV
VSSLTESGWAFVNAEGYIKQFCYPKQIYLLRTLVSSTIIMLITLPAIIPIQLYFGSFSIVGWLLAVPGLLLLLLAALGHI
TLCAYLGVRFRDLPHAAGGLLQVAFFVTPVMFPAKVLQDHHLELIYQFNPLYYILEAARHPILLGELAAPEIYAFAGVYI
LLVWAFAGLVARSLDSRVVLLL
>Mature_262_residues
MHRLLTDSWQALRVWRVWLFLGVQDVKARFRRSAIGPVWIFLNMSLFVAGAGLLYGVMINQPMKILLPYLVTGFTLWAMV
VSSLTESGWAFVNAEGYIKQFCYPKQIYLLRTLVSSTIIMLITLPAIIPIQLYFGSFSIVGWLLAVPGLLLLLLAALGHI
TLCAYLGVRFRDLPHAAGGLLQVAFFVTPVMFPAKVLQDHHLELIYQFNPLYYILEAARHPILLGELAAPEIYAFAGVYI
LLVWAFAGLVARSLDSRVVLLL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29410; Mature: 29410

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRLLTDSWQALRVWRVWLFLGVQDVKARFRRSAIGPVWIFLNMSLFVAGAGLLYGVMIN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
QPMKILLPYLVTGFTLWAMVVSSLTESGWAFVNAEGYIKQFCYPKQIYLLRTLVSSTIIM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHH
LITLPAIIPIQLYFGSFSIVGWLLAVPGLLLLLLAALGHITLCAYLGVRFRDLPHAAGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHH
LQVAFFVTPVMFPAKVLQDHHLELIYQFNPLYYILEAARHPILLGELAAPEIYAFAGVYI
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH
LLVWAFAGLVARSLDSRVVLLL
HHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MHRLLTDSWQALRVWRVWLFLGVQDVKARFRRSAIGPVWIFLNMSLFVAGAGLLYGVMIN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
QPMKILLPYLVTGFTLWAMVVSSLTESGWAFVNAEGYIKQFCYPKQIYLLRTLVSSTIIM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHH
LITLPAIIPIQLYFGSFSIVGWLLAVPGLLLLLLAALGHITLCAYLGVRFRDLPHAAGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHH
LQVAFFVTPVMFPAKVLQDHHLELIYQFNPLYYILEAARHPILLGELAAPEIYAFAGVYI
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH
LLVWAFAGLVARSLDSRVVLLL
HHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]