Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 116625929

GI number: 116625929

Start: 8659173

End: 8659670

Strand: Direct

Name: rpoE [C]

Synonym: Acid_6886

Alternate gene names: 116625929

Gene position: 8659173-8659670 (Clockwise)

Preceding gene: 116625928

Following gene: 116625930

Centisome position: 86.89

GC content: 58.63

Gene sequence:

>498_bases
GTGGCGACGTGGTGTTTCCGGCTTACCGGCCAGGTAGATTCGGCCGCAGACCTGGCGCAGGACGTGCTGTTGAAAGCATT
TCAGCGCCTCGAATCATTCCGCGGGGATTCGCGCTTTTCCACCTGGTTGTATTCGATTACGCGCAATCACTGCATGGACG
AGCTACGCTTGCGTGCGGCGCGTCGGGGCGAGGTCACCGACACGGTCTTGGATGAGTTGGCAGACGAACGTCTGGAGGAT
TTCTCGAAGACTATGGAGCGCCAGGAATCCGAGCAGGTCGTCCGGCGGCTGATCAGCGAAAACCTGGACGAGATAGAAAG
CAGTGTCATGACGCTCCACTATGTCGATGAACTTCCATTGGACGCAATCACGCGGTTGATGGGGCTCACCAACCAGAGCG
GATCCAAGGCTTACATTGTGAGTGCCAGGCGCAAGCTCACCCGCGCATTCGAGAAATGGCGGCAGGCGTCAAGCGGCAAA
GGGGTACGGCGTGACTGA

Upstream 100 bases:

>100_bases
ACTTTCGGACGAGCAACTCGTCCAGTTGTACCGTGCAGAACCAGGTTCTCCTGTCGCAGCGGCCCTGCTCGACGAGTTGT
TCCGGAGGCATCGTGCGAAG

Downstream 100 bases:

>100_bases
ACCTTCATCCGATGGCGAATTCCTACGGCGCGCTCTCAAGCCCGGAGCGGACTGCCTATCCGTGGAAAAGCTGGAGATCT
GCTTGCAAGACGGTCCGGCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Factor Sigma C; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MATWCFRLTGQVDSAADLAQDVLLKAFQRLESFRGDSRFSTWLYSITRNHCMDELRLRAARRGEVTDTVLDELADERLED
FSKTMERQESEQVVRRLISENLDEIESSVMTLHYVDELPLDAITRLMGLTNQSGSKAYIVSARRKLTRAFEKWRQASSGK
GVRRD

Sequences:

>Translated_165_residues
MATWCFRLTGQVDSAADLAQDVLLKAFQRLESFRGDSRFSTWLYSITRNHCMDELRLRAARRGEVTDTVLDELADERLED
FSKTMERQESEQVVRRLISENLDEIESSVMTLHYVDELPLDAITRLMGLTNQSGSKAYIVSARRKLTRAFEKWRQASSGK
GVRRD
>Mature_164_residues
ATWCFRLTGQVDSAADLAQDVLLKAFQRLESFRGDSRFSTWLYSITRNHCMDELRLRAARRGEVTDTVLDELADERLEDF
SKTMERQESEQVVRRLISENLDEIESSVMTLHYVDELPLDAITRLMGLTNQSGSKAYIVSARRKLTRAFEKWRQASSGKG
VRRD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19068; Mature: 18937

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATWCFRLTGQVDSAADLAQDVLLKAFQRLESFRGDSRFSTWLYSITRNHCMDELRLRAA
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRGEVTDTVLDELADERLEDFSKTMERQESEQVVRRLISENLDEIESSVMTLHYVDELPL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
DAITRLMGLTNQSGSKAYIVSARRKLTRAFEKWRQASSGKGVRRD
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ATWCFRLTGQVDSAADLAQDVLLKAFQRLESFRGDSRFSTWLYSITRNHCMDELRLRAA
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRGEVTDTVLDELADERLEDFSKTMERQESEQVVRRLISENLDEIESSVMTLHYVDELPL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
DAITRLMGLTNQSGSKAYIVSARRKLTRAFEKWRQASSGKGVRRD
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA