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The map label for this gene is xerD [H]

Identifier: 116625884

GI number: 116625884

Start: 8568734

End: 8569168

Strand: Reverse

Name: xerD [H]

Synonym: Acid_7950

Alternate gene names: 116625884

Gene position: 8569168-8568734 (Counterclockwise)

Preceding gene: 116625885

Following gene: 116625883

Centisome position: 85.99

GC content: 61.38

Gene sequence:

>435_bases
GTGCTCCTGCGCGGGAGCAAGACCGACCCCGAAGGCGCCGAGCGCCGTGTGGGCATCCCCTACGGCTCCGATATTTCAAC
ATGTCCGGTTCGCACCTATCGCCGTTGGCTGGAGGTTTTGGGCATCGCCGCCGGCCCTGTCTTTCGCTCGACTGATCATC
ACGGCCGCATCGGACGTGGCGCCATCACGCCGCAAATGGTCGCTTTGGTGGTGAACCGTTCCTGCGAAGCCGCTGGGCTC
GATCCTTTGCGTTTCAGTACGCACAGCCTTCGAAGTGGCCTTGCCACGCAGGCCGCTCGCAACGGTGCCAGCGAGTGCGC
GATCATTGCGACAGACTGGCCACAAATCAGTACAAATGGTGAGGCGCTATATTCATCAAGGCGGGCTCTTCATCGACGAC
TTGGTTTGTGGTCTTGCGGAGGAGCCCCGTTGTGA

Upstream 100 bases:

>100_bases
GCGCGCTCCTGTTGGTTGGCTTTTACCAGCGGCGTCCGCAGGTCGGAACTGGTGGCGCTGACCGCCGAGGACATTGAGGT
CGTGGCCGGGCGGCTTTCGC

Downstream 100 bases:

>100_bases
CCTTAGCGTTGAGAGGAATACTCGCCAAAATTCTGTTTCGCCGAATGGACCACGGAACATTGGCGCTAGCGATGACCGCC
GGCGGCATCGTCAGCTGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MLLRGSKTDPEGAERRVGIPYGSDISTCPVRTYRRWLEVLGIAAGPVFRSTDHHGRIGRGAITPQMVALVVNRSCEAAGL
DPLRFSTHSLRSGLATQAARNGASECAIIATDWPQISTNGEALYSSRRALHRRLGLWSCGGAPL

Sequences:

>Translated_144_residues
MLLRGSKTDPEGAERRVGIPYGSDISTCPVRTYRRWLEVLGIAAGPVFRSTDHHGRIGRGAITPQMVALVVNRSCEAAGL
DPLRFSTHSLRSGLATQAARNGASECAIIATDWPQISTNGEALYSSRRALHRRLGLWSCGGAPL
>Mature_144_residues
MLLRGSKTDPEGAERRVGIPYGSDISTCPVRTYRRWLEVLGIAAGPVFRSTDHHGRIGRGAITPQMVALVVNRSCEAAGL
DPLRFSTHSLRSGLATQAARNGASECAIIATDWPQISTNGEALYSSRRALHRRLGLWSCGGAPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 15497; Mature: 15497

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRGSKTDPEGAERRVGIPYGSDISTCPVRTYRRWLEVLGIAAGPVFRSTDHHGRIGRG
CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AITPQMVALVVNRSCEAAGLDPLRFSTHSLRSGLATQAARNGASECAIIATDWPQISTNG
CCCHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
EALYSSRRALHRRLGLWSCGGAPL
HHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLLRGSKTDPEGAERRVGIPYGSDISTCPVRTYRRWLEVLGIAAGPVFRSTDHHGRIGRG
CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AITPQMVALVVNRSCEAAGLDPLRFSTHSLRSGLATQAARNGASECAIIATDWPQISTNG
CCCHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
EALYSSRRALHRRLGLWSCGGAPL
HHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]