| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is gcd [H]
Identifier: 116625816
GI number: 116625816
Start: 8480741
End: 8483185
Strand: Reverse
Name: gcd [H]
Synonym: Acid_6767
Alternate gene names: 116625816
Gene position: 8483185-8480741 (Counterclockwise)
Preceding gene: 116625817
Following gene: 116625815
Centisome position: 85.12
GC content: 60.2
Gene sequence:
>2445_bases ATGAGAAGTTGGCCCGATGGGCATCACATCGCCAAGAACATGTTCGCCATCGCCTTCTGCATCGTGTTAGCGCTGCCGCT GGCATACGGCCAAAACCAGTCGTGGATGGACTACGGTGGAGGGACGGACAGCTCCCATTACACCAGAAGCAAGCAGATCA CCAAGGCCAATGTCGGCCAACTCGAAGTTGCCTGGGCTTACCCACACGGAGAAACCGGATTCAACCCCATCGTCGTCGGC AACGTCATGTATACGGTCGCACGCAATAGCTCGTTGGTCGCCCTGGACGCTACCACCGGCAAGGAGATCTGGGTTCACGA AGGCCTGAGCGGCATCACCAGCCGCGGCATGAACTATTGGGAAAGTAAGGATCGCAAGGACCGGCGCCTCATCTTCGCGG TCAACAGCTATTTGCAGGAAATTGACGCCGTGACCGGACTCACCGTCATGAGTTTTGGACAAAAAGGCGTCGTCAATCTG CGCGAGGGACTCGAGCGCGATGTCAGTTCCATGGGTAGGGTGCAATCGCGAAGTCCCGGCAAGGTCTTTGAGAATCTGGT GATTCTTGGTTCCGCGCCTGGCGAAGAATATGTGTCGCCGCCCGGAGATCTGAGAGCTTACGATGTGATTTCCGGAAAAC TCGTCTGGCAGTTCCACACTGTGCCTTATCCCGGCGAGCCTCATTATGATACTTTCCCGAAGGACGCATGGAAGTACATT GGCGGAAACAATACGTGGGGCGATCTGACCATCGACGCGAAAAATGGCATCGCCTTTTTTCCGCTCGGGTCGCCTACATA TGACTTCTATGGCGCCGACCGCAAAGGGGCGGGCCTTTACGGGGATTGCCTGCTGGCGCTGGACGCTCGCACGGGGAAGT ATCTCTGGCACTTCCAGACTGTTCACCACGACCTCTGGGATTATGACCTGACCTCAGCGCCGCAGCTTACCACCATAAAG CGCGATGGCAAGGAAGTGGAAGTGGTCGCGGAGGCCGGAAAGACAGGCTTTCTGTTCGTGTTTGAGAGAAAGACAGGTAA GCCGATCTGGCCCATTGAAGAGCGCAAGGCGCCGAAATCCGACGTCCCGGGGGAAGAGGCCTGGCCGACGCAGCCTTATC CAACTGCGCCTCCTCCGTTTGCACGCCAGAGTTTCACCGTAGACGACATCAATCCCTATCTGCCTGAAGAACAGCGCGCC CTCATCAAGGATCAACTCTTGAGCTGGCGAAATGAAGGGCTGTTCACTCCCCCCACACTGCGGGGCACGGTCCAAATGCC CGGTGACCAGGGCGGATCGAACTGGGGCACAACCGCGGCCAATCCAACCAATGGCATCGTGTACGTGCTGAGTACCGATG CTCCGGCGGTCATCCAACTGGAGAAGAGCGCGCCTGGAATCCCGGCGCCCAACGCGGCTTTTGGATCTCAAGGTCGTGGT GGAGGCGGTGGGCGAGGCCCCATGCAAGCATTCGCCGGGCGTGCCTTGTACGTTCAGAATTGTCAGGCCTGCCATGGGGC GGATCTGAAGGGCGCCACCGGACCAACCCTGATCGATATCGCGGTCAAGGTGGGAGCTGACGCAATCCGCGCGAATATCC AGGGAGGCAAGGGCGCTATGCCCTCGATCGCTGGCCTCACTCCATCGGATATGGACAGCATTATGGCGTTTCTGGCAAAC CCGGCGGCGGCTACCGCGGGGCGCGGTCGAGGCGGCCCCGGCGGGATGCAGGGAGATACGGCCTCCCTGGGTGGCCCCGT GGTCGCTTCCGGTCCGGCGCCAGCCTCGATGACGGGTGGGGGCGGCCGGGGTGGCCGTGGAGTTGGCGACGCCAATGGTG CTCCCGAAGCTCCGTCTGCATCGGAGGGAGCGTCTGCCGTCAAGTTGACGAAGTCGGGAGGAAACGTTCAGCATGCCTAC GGCGGTAACGGAGGGAGCGCCGCGTATCCGGAAGGTCTCGAAGTTCCCGATGTTCGATACAACAGCGCGTGGGCCGTTTC CTATAACGCGATCAAACCGCCATGGTCCACAATCACGGCTTACGATTTGAACAAAGGCACGATCAAGTGGCAGGTTCCGG CCGGCGACGATCTGGCAATGGCTGCACAGGGTGTTCACGATACGGGAAGCCGCCAACTGAGGACTGGAATCATAGCGACC GCAACCGGACTCGTGTTTCAGGTAGGCGGCGACAGAAAAGTGCGCGCCTATGACGAGGAAACCGGGAAGGTTCTTTGGAC CAAAGAAATCGGGGGCAGTTCGCGCGGTGTGCCGGCGATGTACGAGGTCAATGGCCGCCAATATCTCGTGATTTCGGTGG CCGCCGGTGGCGGCAGGGGAGTTGGGGCGGCCGCGGCGGCTCCCGACTCAGGCAATTTGCCAACCGGTTACGTCGCGTTC GCGCTGCCTCAGGCTGAGGCGTCGCCAACCGGGAAGGTCAGGTAA
Upstream 100 bases:
>100_bases CGGCGTGGAAATGAATGAGGACTACCTCAAGAAGCTACCGGGAGCGACCTGGTTTCCGGCATAGACCACAGGCAACGGCA AAACGACAATCGAGGTCGAT
Downstream 100 bases:
>100_bases GGAGGCATTGTGCGGATAAAGGTCTGCTTCGGCATCTTGGTGCTCGCGCCCGCAGCTTTACTGATCTTGCCCGCGAAAGC CAACAAGAACTTTGTTCCTG
Product: pyrrolo-quinoline quinone
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MRSWPDGHHIAKNMFAIAFCIVLALPLAYGQNQSWMDYGGGTDSSHYTRSKQITKANVGQLEVAWAYPHGETGFNPIVVG NVMYTVARNSSLVALDATTGKEIWVHEGLSGITSRGMNYWESKDRKDRRLIFAVNSYLQEIDAVTGLTVMSFGQKGVVNL REGLERDVSSMGRVQSRSPGKVFENLVILGSAPGEEYVSPPGDLRAYDVISGKLVWQFHTVPYPGEPHYDTFPKDAWKYI GGNNTWGDLTIDAKNGIAFFPLGSPTYDFYGADRKGAGLYGDCLLALDARTGKYLWHFQTVHHDLWDYDLTSAPQLTTIK RDGKEVEVVAEAGKTGFLFVFERKTGKPIWPIEERKAPKSDVPGEEAWPTQPYPTAPPPFARQSFTVDDINPYLPEEQRA LIKDQLLSWRNEGLFTPPTLRGTVQMPGDQGGSNWGTTAANPTNGIVYVLSTDAPAVIQLEKSAPGIPAPNAAFGSQGRG GGGGRGPMQAFAGRALYVQNCQACHGADLKGATGPTLIDIAVKVGADAIRANIQGGKGAMPSIAGLTPSDMDSIMAFLAN PAAATAGRGRGGPGGMQGDTASLGGPVVASGPAPASMTGGGGRGGRGVGDANGAPEAPSASEGASAVKLTKSGGNVQHAY GGNGGSAAYPEGLEVPDVRYNSAWAVSYNAIKPPWSTITAYDLNKGTIKWQVPAGDDLAMAAQGVHDTGSRQLRTGIIAT ATGLVFQVGGDRKVRAYDEETGKVLWTKEIGGSSRGVPAMYEVNGRQYLVISVAAGGGRGVGAAAAAPDSGNLPTGYVAF ALPQAEASPTGKVR
Sequences:
>Translated_814_residues MRSWPDGHHIAKNMFAIAFCIVLALPLAYGQNQSWMDYGGGTDSSHYTRSKQITKANVGQLEVAWAYPHGETGFNPIVVG NVMYTVARNSSLVALDATTGKEIWVHEGLSGITSRGMNYWESKDRKDRRLIFAVNSYLQEIDAVTGLTVMSFGQKGVVNL REGLERDVSSMGRVQSRSPGKVFENLVILGSAPGEEYVSPPGDLRAYDVISGKLVWQFHTVPYPGEPHYDTFPKDAWKYI GGNNTWGDLTIDAKNGIAFFPLGSPTYDFYGADRKGAGLYGDCLLALDARTGKYLWHFQTVHHDLWDYDLTSAPQLTTIK RDGKEVEVVAEAGKTGFLFVFERKTGKPIWPIEERKAPKSDVPGEEAWPTQPYPTAPPPFARQSFTVDDINPYLPEEQRA LIKDQLLSWRNEGLFTPPTLRGTVQMPGDQGGSNWGTTAANPTNGIVYVLSTDAPAVIQLEKSAPGIPAPNAAFGSQGRG GGGGRGPMQAFAGRALYVQNCQACHGADLKGATGPTLIDIAVKVGADAIRANIQGGKGAMPSIAGLTPSDMDSIMAFLAN PAAATAGRGRGGPGGMQGDTASLGGPVVASGPAPASMTGGGGRGGRGVGDANGAPEAPSASEGASAVKLTKSGGNVQHAY GGNGGSAAYPEGLEVPDVRYNSAWAVSYNAIKPPWSTITAYDLNKGTIKWQVPAGDDLAMAAQGVHDTGSRQLRTGIIAT ATGLVFQVGGDRKVRAYDEETGKVLWTKEIGGSSRGVPAMYEVNGRQYLVISVAAGGGRGVGAAAAAPDSGNLPTGYVAF ALPQAEASPTGKVR >Mature_814_residues MRSWPDGHHIAKNMFAIAFCIVLALPLAYGQNQSWMDYGGGTDSSHYTRSKQITKANVGQLEVAWAYPHGETGFNPIVVG NVMYTVARNSSLVALDATTGKEIWVHEGLSGITSRGMNYWESKDRKDRRLIFAVNSYLQEIDAVTGLTVMSFGQKGVVNL REGLERDVSSMGRVQSRSPGKVFENLVILGSAPGEEYVSPPGDLRAYDVISGKLVWQFHTVPYPGEPHYDTFPKDAWKYI GGNNTWGDLTIDAKNGIAFFPLGSPTYDFYGADRKGAGLYGDCLLALDARTGKYLWHFQTVHHDLWDYDLTSAPQLTTIK RDGKEVEVVAEAGKTGFLFVFERKTGKPIWPIEERKAPKSDVPGEEAWPTQPYPTAPPPFARQSFTVDDINPYLPEEQRA LIKDQLLSWRNEGLFTPPTLRGTVQMPGDQGGSNWGTTAANPTNGIVYVLSTDAPAVIQLEKSAPGIPAPNAAFGSQGRG GGGGRGPMQAFAGRALYVQNCQACHGADLKGATGPTLIDIAVKVGADAIRANIQGGKGAMPSIAGLTPSDMDSIMAFLAN PAAATAGRGRGGPGGMQGDTASLGGPVVASGPAPASMTGGGGRGGRGVGDANGAPEAPSASEGASAVKLTKSGGNVQHAY GGNGGSAAYPEGLEVPDVRYNSAWAVSYNAIKPPWSTITAYDLNKGTIKWQVPAGDDLAMAAQGVHDTGSRQLRTGIIAT ATGLVFQVGGDRKVRAYDEETGKVLWTKEIGGSSRGVPAMYEVNGRQYLVISVAAGGGRGVGAAAAAPDSGNLPTGYVAF ALPQAEASPTGKVR
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=476, Percent_Identity=30.4621848739496, Blast_Score=206, Evalue=5e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 85828; Mature: 85828
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSWPDGHHIAKNMFAIAFCIVLALPLAYGQNQSWMDYGGGTDSSHYTRSKQITKANVGQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEECCCCCEECCCCE LEVAWAYPHGETGFNPIVVGNVMYTVARNSSLVALDATTGKEIWVHEGLSGITSRGMNYW EEEEEECCCCCCCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEECCCHHHHHHCCCHH ESKDRKDRRLIFAVNSYLQEIDAVTGLTVMSFGQKGVVNLREGLERDVSSMGRVQSRSPG HCCCCCCCEEEEHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCH KVFENLVILGSAPGEEYVSPPGDLRAYDVISGKLVWQFHTVPYPGEPHYDTFPKDAWKYI HHHCCEEEEECCCCHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHC GGNNTWGDLTIDAKNGIAFFPLGSPTYDFYGADRKGAGLYGDCLLALDARTGKYLWHFQT CCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEH VHHDLWDYDLTSAPQLTTIKRDGKEVEVVAEAGKTGFLFVFERKTGKPIWPIEERKAPKS HHHHHCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHCCCCCC DVPGEEAWPTQPYPTAPPPFARQSFTVDDINPYLPEEQRALIKDQLLSWRNEGLFTPPTL CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC RGTVQMPGDQGGSNWGTTAANPTNGIVYVLSTDAPAVIQLEKSAPGIPAPNAAFGSQGRG CEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC GGGGRGPMQAFAGRALYVQNCQACHGADLKGATGPTLIDIAVKVGADAIRANIQGGKGAM CCCCCCHHHHHCCCEEEEECCCHHCCCCCCCCCCCEEEEEEEHHCCCCEEEECCCCCCCC PSIAGLTPSDMDSIMAFLANPAAATAGRGRGGPGGMQGDTASLGGPVVASGPAPASMTGG CHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC GGRGGRGVGDANGAPEAPSASEGASAVKLTKSGGNVQHAYGGNGGSAAYPEGLEVPDVRY CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEC NSAWAVSYNAIKPPWSTITAYDLNKGTIKWQVPAGDDLAMAAQGVHDTGSRQLRTGIIAT CCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCHHHHHCEEEE ATGLVFQVGGDRKVRAYDEETGKVLWTKEIGGSSRGVPAMYEVNGRQYLVISVAAGGGRG ECEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCCC VGAAAAAPDSGNLPTGYVAFALPQAEASPTGKVR CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure MRSWPDGHHIAKNMFAIAFCIVLALPLAYGQNQSWMDYGGGTDSSHYTRSKQITKANVGQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEECCCCCEECCCCE LEVAWAYPHGETGFNPIVVGNVMYTVARNSSLVALDATTGKEIWVHEGLSGITSRGMNYW EEEEEECCCCCCCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEECCCHHHHHHCCCHH ESKDRKDRRLIFAVNSYLQEIDAVTGLTVMSFGQKGVVNLREGLERDVSSMGRVQSRSPG HCCCCCCCEEEEHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCH KVFENLVILGSAPGEEYVSPPGDLRAYDVISGKLVWQFHTVPYPGEPHYDTFPKDAWKYI HHHCCEEEEECCCCHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHC GGNNTWGDLTIDAKNGIAFFPLGSPTYDFYGADRKGAGLYGDCLLALDARTGKYLWHFQT CCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEH VHHDLWDYDLTSAPQLTTIKRDGKEVEVVAEAGKTGFLFVFERKTGKPIWPIEERKAPKS HHHHHCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHCCCCCC DVPGEEAWPTQPYPTAPPPFARQSFTVDDINPYLPEEQRALIKDQLLSWRNEGLFTPPTL CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC RGTVQMPGDQGGSNWGTTAANPTNGIVYVLSTDAPAVIQLEKSAPGIPAPNAAFGSQGRG CEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC GGGGRGPMQAFAGRALYVQNCQACHGADLKGATGPTLIDIAVKVGADAIRANIQGGKGAM CCCCCCHHHHHCCCEEEEECCCHHCCCCCCCCCCCEEEEEEEHHCCCCEEEECCCCCCCC PSIAGLTPSDMDSIMAFLANPAAATAGRGRGGPGGMQGDTASLGGPVVASGPAPASMTGG CHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC GGRGGRGVGDANGAPEAPSASEGASAVKLTKSGGNVQHAYGGNGGSAAYPEGLEVPDVRY CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEC NSAWAVSYNAIKPPWSTITAYDLNKGTIKWQVPAGDDLAMAAQGVHDTGSRQLRTGIIAT CCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCHHHHHCEEEE ATGLVFQVGGDRKVRAYDEETGKVLWTKEIGGSSRGVPAMYEVNGRQYLVISVAAGGGRG ECEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCCC VGAAAAAPDSGNLPTGYVAFALPQAEASPTGKVR CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]