| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is 116625653
Identifier: 116625653
GI number: 116625653
Start: 8284027
End: 8286510
Strand: Direct
Name: 116625653
Synonym: Acid_6602
Alternate gene names: NA
Gene position: 8284027-8286510 (Clockwise)
Preceding gene: 116625651
Following gene: 116625654
Centisome position: 83.13
GC content: 63.89
Gene sequence:
>2484_bases ATGTCGCGAGTTAGAAATACCCCTACCCATCGGATTGCGCTGGTGGCCGCGTTCCTGCTGCTGGTGGCGCTGCTCAGCTC ACAACCGTCGCCCCGCGAACAGGTCGGACCGCTGCCCGGCGGATCCTTCCTGTTGAGCAGCGGATGGCGCGTGGACCCGG TTGGCCGGCAGGTGCCGCTCGACACCTTTCCCATGTCCTCGGCCCTCTCCCCGGATGGCAAATACTTGCTGGTGCTCAAT GGCGGCTACAAACCGCCGACTGTCAGCGTGATCGATACAGCGAGCGGGAGTGTCACCGGCAGTGTCCCGGTGACCGACGG CTGGCTCGGCCTTGCGTTCGCGCCCAAGGGGGATATGGTCTACGTAGGCGGCGGGTCGCAGGCTTCGGTCTTCGAATTCG CCTTCGCCAACGGAAAGTTGATCCCCGCCCGCACCTTTCTGACAGTTCCGAAGGAGCAGCGCGCGGATGCGGATTTCGTT GGCGACGTGGCGCTTTCGCCCGATGGCCGGCTGATTTTCGCGGCCAGCCTCTATCGCGACTCGATCACGGTGATCAACCC GCAATCGGGCATGGTGATCGCGCAGTTCAAGACTGGTCGGCGCCCCTACCGGATTCTCTTTCATCCCGACGGCAAGAGCT TTTTCGTGAGCCATTGGGCGGACGGCACGGTCGGACAGTACGATACCGCGGGCGGCAGCCTGATGGGGTCGCCGACGCGC GTCGGCGCGCATGCCAGCGACATGGTGTGGCACTCCGGGGCGGCCGAAGCCGCGGACGGGCAGCCGCCGGCTTACACGGC GCGCATCTTCGTGGCCGCGGCCAGCACCAACAACGTATTCGCGGTCGGCGTCAGCCCGGGCAAAGAGCTGACCGTGGTGG AGAGCATCAACCTGGCGATGACGCCGCGCCAGCCGTTGGGCATGACGCCCTCGGCGCTGGGACTAAGCCCGGACGGCAAG CGGCTCTTTGTGGCATGCTCGGACGCCAACGCCGCCGCCGTGATCGACATTTCCCAATCGCTGAGCCGTGTGGAAGGCTT CATTCCCACCGGCTGGTATCCCACCGCGGTGCGCCCGCTGGCCGGCGGAACGCTGGTGGTGCTAAACGGCAAGGGACTGC GCTCTTTCCCGAACGCAGAAAACGGCCCCAATCCCAGCAAGCGTCCGAGCCCCGTCCATGCCGGCGAGCCCGCGCCCCTC GCGGTTCAGTTTGTGGGGCGCATGCAGACCGGGACGGCATCTTGGATCGACGCCTTCACGCCGGAGCAGCTCAACGCGTG GACGGCCAAGACGCTCGCCAACTCGGCGTACACCGATGCCAAGCTCGACATTCCGAACCCGCTGCCCAAAATCGAGCACG TGATCTATATCGTTAAGGAGAACCGCACCTACGACCAGGTCCTCGGCGATATGAAGGAAGGCAACGGCGACGCCAAGCTG GTGTTGTTCGGCGAGAACGTGACTCCGAACCTGCACAAGCTGGCGCGCGAATTCGTGCTGCTCGATAATTTCTATGTGAA CAGCGATGTGAGCGCGGACGGCCACAATTGGACCACCGCCGCGATTGCGCCGGATTATGTGCAGAAGATGTGGCCCAACA AGTATGCCAACCGGCGCAAGCTTTACGATTTCGAGGAACAAGATCCGCTTTCGGTGCCGCCCGCGGGCTACCTCTGGACC AATGCCGTGACGGCCGGCGTCACGGTGCGCAACTTCGGTTACATGGTGAACAACCGGGCCGGCGCGAAGCCGGGCGAGCC GCAGATCACGGGCGTGCGCGACCCGGTCCTGGCCAGGCTGACCAACCCGATGTATCGCGGCTTCGACCTCGATTATCCGG ATGTGGAGCGCGTCAAGGTTTTCCTCGGCGAACTCGCCGAGAATGAGAAGACCGGCAACATGGCGCGGCTCACGGTGATG CGCCTGGGCAACGATCATACGTCGGGCACGGCCGCCGGCAAAGTAGCTCCGCTTGCCGCCGCCGCCGATAACGACTACGC GGTCGGCATGCTGGTGGAGGGCCTTTCCAAATCGCGATTCTGGAACAACACGGTGATTCTGATCGTGGAAGACGATGCGC AGAACGGGCCGGATCACGTGGATTCGCACCGCTCGCCCGGCTTCGTGATATCGTCCTGGACCAAGCGCCATACGGTGGAC GGCACGATGTATAACACGACGTCCATGCTGCGAACCATCGAGTATCTGTTGGGGCTGCGGCCGATGACTTCTTTCGACGC CGGCGCGCGCCCGATGTCTACCGTGTTCCTGAGCCAGCCCAATCCGGCCGGCTACACCGCCGAGAAACCGCGGATTGCCC TGGATGAGAGAAATCCGGCGGCGACACCGGCCGCGGCTCGCGCCGCGAAACTGAACTTCGAGGAGGCTGACGAAAACGAC GACGATGAGATGAATGACATCCTCTGGCGCGCGATTCGCAAAGACGCGCCGCCTCCCCCAATGCGCAGCATCTTTGGGAA ATAG
Upstream 100 bases:
>100_bases GACGGTACTGCCTGGACATTTTCAACACACTATCAGATTTGGGCCGGCCGGATCGGGGCGCGGCTTTAGGAAGTTGCGCT CTGTACAATGGGAGGAGCCC
Downstream 100 bases:
>100_bases TACGACGGAGACCGCGTCTCTCGTTTCTTGCGCCGTGAAACCGATTAACGCCTAATGCCTCAAATTCATTTGTGCTTCTT ATGGCACATGCACCAGCCGT
Product: YVTN beta-propeller repeat-containing protein
Products: NA
Alternate protein names: Surface Antigen Gene; 40-Residue YVTN Family Beta-Propeller Repeat Protein; Lipoprotein; Cell Surface Protein; Phosphoesterase; Surface Layer Protein; SMP-30/Gluconolaconase/LRE Domain Protein; WD40 Domain-Containing Protein; IPT/TIG Domain Protein; Tat Pathway Signal Sequence Domain-Containing Protein; Phosphoesterase Family Protein; Triple Helix Repeat-Containing Collagen; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 827; Mature: 826
Protein sequence:
>827_residues MSRVRNTPTHRIALVAAFLLLVALLSSQPSPREQVGPLPGGSFLLSSGWRVDPVGRQVPLDTFPMSSALSPDGKYLLVLN GGYKPPTVSVIDTASGSVTGSVPVTDGWLGLAFAPKGDMVYVGGGSQASVFEFAFANGKLIPARTFLTVPKEQRADADFV GDVALSPDGRLIFAASLYRDSITVINPQSGMVIAQFKTGRRPYRILFHPDGKSFFVSHWADGTVGQYDTAGGSLMGSPTR VGAHASDMVWHSGAAEAADGQPPAYTARIFVAAASTNNVFAVGVSPGKELTVVESINLAMTPRQPLGMTPSALGLSPDGK RLFVACSDANAAAVIDISQSLSRVEGFIPTGWYPTAVRPLAGGTLVVLNGKGLRSFPNAENGPNPSKRPSPVHAGEPAPL AVQFVGRMQTGTASWIDAFTPEQLNAWTAKTLANSAYTDAKLDIPNPLPKIEHVIYIVKENRTYDQVLGDMKEGNGDAKL VLFGENVTPNLHKLAREFVLLDNFYVNSDVSADGHNWTTAAIAPDYVQKMWPNKYANRRKLYDFEEQDPLSVPPAGYLWT NAVTAGVTVRNFGYMVNNRAGAKPGEPQITGVRDPVLARLTNPMYRGFDLDYPDVERVKVFLGELAENEKTGNMARLTVM RLGNDHTSGTAAGKVAPLAAAADNDYAVGMLVEGLSKSRFWNNTVILIVEDDAQNGPDHVDSHRSPGFVISSWTKRHTVD GTMYNTTSMLRTIEYLLGLRPMTSFDAGARPMSTVFLSQPNPAGYTAEKPRIALDERNPAATPAAARAAKLNFEEADEND DDEMNDILWRAIRKDAPPPPMRSIFGK
Sequences:
>Translated_827_residues MSRVRNTPTHRIALVAAFLLLVALLSSQPSPREQVGPLPGGSFLLSSGWRVDPVGRQVPLDTFPMSSALSPDGKYLLVLN GGYKPPTVSVIDTASGSVTGSVPVTDGWLGLAFAPKGDMVYVGGGSQASVFEFAFANGKLIPARTFLTVPKEQRADADFV GDVALSPDGRLIFAASLYRDSITVINPQSGMVIAQFKTGRRPYRILFHPDGKSFFVSHWADGTVGQYDTAGGSLMGSPTR VGAHASDMVWHSGAAEAADGQPPAYTARIFVAAASTNNVFAVGVSPGKELTVVESINLAMTPRQPLGMTPSALGLSPDGK RLFVACSDANAAAVIDISQSLSRVEGFIPTGWYPTAVRPLAGGTLVVLNGKGLRSFPNAENGPNPSKRPSPVHAGEPAPL AVQFVGRMQTGTASWIDAFTPEQLNAWTAKTLANSAYTDAKLDIPNPLPKIEHVIYIVKENRTYDQVLGDMKEGNGDAKL VLFGENVTPNLHKLAREFVLLDNFYVNSDVSADGHNWTTAAIAPDYVQKMWPNKYANRRKLYDFEEQDPLSVPPAGYLWT NAVTAGVTVRNFGYMVNNRAGAKPGEPQITGVRDPVLARLTNPMYRGFDLDYPDVERVKVFLGELAENEKTGNMARLTVM RLGNDHTSGTAAGKVAPLAAAADNDYAVGMLVEGLSKSRFWNNTVILIVEDDAQNGPDHVDSHRSPGFVISSWTKRHTVD GTMYNTTSMLRTIEYLLGLRPMTSFDAGARPMSTVFLSQPNPAGYTAEKPRIALDERNPAATPAAARAAKLNFEEADEND DDEMNDILWRAIRKDAPPPPMRSIFGK >Mature_826_residues SRVRNTPTHRIALVAAFLLLVALLSSQPSPREQVGPLPGGSFLLSSGWRVDPVGRQVPLDTFPMSSALSPDGKYLLVLNG GYKPPTVSVIDTASGSVTGSVPVTDGWLGLAFAPKGDMVYVGGGSQASVFEFAFANGKLIPARTFLTVPKEQRADADFVG DVALSPDGRLIFAASLYRDSITVINPQSGMVIAQFKTGRRPYRILFHPDGKSFFVSHWADGTVGQYDTAGGSLMGSPTRV GAHASDMVWHSGAAEAADGQPPAYTARIFVAAASTNNVFAVGVSPGKELTVVESINLAMTPRQPLGMTPSALGLSPDGKR LFVACSDANAAAVIDISQSLSRVEGFIPTGWYPTAVRPLAGGTLVVLNGKGLRSFPNAENGPNPSKRPSPVHAGEPAPLA VQFVGRMQTGTASWIDAFTPEQLNAWTAKTLANSAYTDAKLDIPNPLPKIEHVIYIVKENRTYDQVLGDMKEGNGDAKLV LFGENVTPNLHKLAREFVLLDNFYVNSDVSADGHNWTTAAIAPDYVQKMWPNKYANRRKLYDFEEQDPLSVPPAGYLWTN AVTAGVTVRNFGYMVNNRAGAKPGEPQITGVRDPVLARLTNPMYRGFDLDYPDVERVKVFLGELAENEKTGNMARLTVMR LGNDHTSGTAAGKVAPLAAAADNDYAVGMLVEGLSKSRFWNNTVILIVEDDAQNGPDHVDSHRSPGFVISSWTKRHTVDG TMYNTTSMLRTIEYLLGLRPMTSFDAGARPMSTVFLSQPNPAGYTAEKPRIALDERNPAATPAAARAAKLNFEEADENDD DEMNDILWRAIRKDAPPPPMRSIFGK
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89033; Mature: 88901
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVRNTPTHRIALVAAFLLLVALLSSQPSPREQVGPLPGGSFLLSSGWRVDPVGRQVPL CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEECCCCEECCCCCCCCC DTFPMSSALSPDGKYLLVLNGGYKPPTVSVIDTASGSVTGSVPVTDGWLGLAFAPKGDMV CCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEECCCCCCCCCEEEEECCCCCEE YVGGGSQASVFEFAFANGKLIPARTFLTVPKEQRADADFVGDVALSPDGRLIFAASLYRD EECCCCCCEEEEEEECCCEEEECEEEEECCCHHCCCCCCCCCEEECCCCCEEEEEEECCC SITVINPQSGMVIAQFKTGRRPYRILFHPDGKSFFVSHWADGTVGQYDTAGGSLMGSPTR CEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC VGAHASDMVWHSGAAEAADGQPPAYTARIFVAAASTNNVFAVGVSPGKELTVVESINLAM CCCCCHHHEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEECCEEE TPRQPLGMTPSALGLSPDGKRLFVACSDANAAAVIDISQSLSRVEGFIPTGWYPTAVRPL CCCCCCCCCCHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCC AGGTLVVLNGKGLRSFPNAENGPNPSKRPSPVHAGEPAPLAVQFVGRMQTGTASWIDAFT CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCHHHHCCC PEQLNAWTAKTLANSAYTDAKLDIPNPLPKIEHVIYIVKENRTYDQVLGDMKEGNGDAKL CHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEE VLFGENVTPNLHKLAREFVLLDNFYVNSDVSADGHNWTTAAIAPDYVQKMWPNKYANRRK EEECCCCCCHHHHHHHHHEEEECEEECCCCCCCCCCEEEEEECHHHHHHHCCCHHCCCCC LYDFEEQDPLSVPPAGYLWTNAVTAGVTVRNFGYMVNNRAGAKPGEPQITGVRDPVLARL CCCCCCCCCCCCCCCCEEECCCEECCEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHH TNPMYRGFDLDYPDVERVKVFLGELAENEKTGNMARLTVMRLGNDHTSGTAAGKVAPLAA CCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEE AADNDYAVGMLVEGLSKSRFWNNTVILIVEDDAQNGPDHVDSHRSPGFVISSWTKRHTVD ECCCCEEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEECCCCCEECC GTMYNTTSMLRTIEYLLGLRPMTSFDAGARPMSTVFLSQPNPAGYTAEKPRIALDERNPA CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCC ATPAAARAAKLNFEEADENDDDEMNDILWRAIRKDAPPPPMRSIFGK CCCHHHHHEECCCHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCC >Mature Secondary Structure SRVRNTPTHRIALVAAFLLLVALLSSQPSPREQVGPLPGGSFLLSSGWRVDPVGRQVPL CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEECCCCEECCCCCCCCC DTFPMSSALSPDGKYLLVLNGGYKPPTVSVIDTASGSVTGSVPVTDGWLGLAFAPKGDMV CCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEECCCCCCCCCEEEEECCCCCEE YVGGGSQASVFEFAFANGKLIPARTFLTVPKEQRADADFVGDVALSPDGRLIFAASLYRD EECCCCCCEEEEEEECCCEEEECEEEEECCCHHCCCCCCCCCEEECCCCCEEEEEEECCC SITVINPQSGMVIAQFKTGRRPYRILFHPDGKSFFVSHWADGTVGQYDTAGGSLMGSPTR CEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC VGAHASDMVWHSGAAEAADGQPPAYTARIFVAAASTNNVFAVGVSPGKELTVVESINLAM CCCCCHHHEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEECCEEE TPRQPLGMTPSALGLSPDGKRLFVACSDANAAAVIDISQSLSRVEGFIPTGWYPTAVRPL CCCCCCCCCCHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCC AGGTLVVLNGKGLRSFPNAENGPNPSKRPSPVHAGEPAPLAVQFVGRMQTGTASWIDAFT CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCHHHHCCC PEQLNAWTAKTLANSAYTDAKLDIPNPLPKIEHVIYIVKENRTYDQVLGDMKEGNGDAKL CHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEE VLFGENVTPNLHKLAREFVLLDNFYVNSDVSADGHNWTTAAIAPDYVQKMWPNKYANRRK EEECCCCCCHHHHHHHHHEEEECEEECCCCCCCCCCEEEEEECHHHHHHHCCCHHCCCCC LYDFEEQDPLSVPPAGYLWTNAVTAGVTVRNFGYMVNNRAGAKPGEPQITGVRDPVLARL CCCCCCCCCCCCCCCCEEECCCEECCEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHH TNPMYRGFDLDYPDVERVKVFLGELAENEKTGNMARLTVMRLGNDHTSGTAAGKVAPLAA CCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEE AADNDYAVGMLVEGLSKSRFWNNTVILIVEDDAQNGPDHVDSHRSPGFVISSWTKRHTVD ECCCCEEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEECCCCCEECC GTMYNTTSMLRTIEYLLGLRPMTSFDAGARPMSTVFLSQPNPAGYTAEKPRIALDERNPA CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCC ATPAAARAAKLNFEEADENDDDEMNDILWRAIRKDAPPPPMRSIFGK CCCHHHHHEECCCHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA