| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ykvO [H]
Identifier: 116625638
GI number: 116625638
Start: 8262701
End: 8263456
Strand: Reverse
Name: ykvO [H]
Synonym: Acid_6587
Alternate gene names: 116625638
Gene position: 8263456-8262701 (Counterclockwise)
Preceding gene: 116625639
Following gene: 116625629
Centisome position: 82.92
GC content: 60.58
Gene sequence:
>756_bases ATGTCCCAAAGATTGGCCGGCAAGGTGGCTGTAATTACCGGTGGTAGCAGCGGGCTCGGCCTTGCGACCGCCAAACGATT CATAGACGAAGGCGCGCACGTTTTCATAACCGGCCGCCGGCAGGGTGAACTGGATGCGGCGGTGAGCCAACTCGGCGAGA ACGCGACCGGCGTCCAGGGCGATATCGCGAAGATCTCCGATATCGAAAAGTGGTATGCAGTCGTAAAGCAGAAGAAGGGC GCTATCGACGTCCTCTTCGCGAATGCCGGCATCGGCGAGTTCGCGCCGCTCGGCGAGATCACGGAGGAGCATTTCGATAA GCAGTTCGACGTGAATGTGCGCGGCACGCTGTTCAGTGTCCAGAAGGCGCTGCCCTTACTCCGGGACGGCAGCAGTATCG TGCTGAACGCATCGATCGTCTCGGTCAAGGGCAATCCGGCTTTCAGCGTTTACAGCGCCACGAAAGCCGCGATCCGTTCT TTTGCGCGGACCTGGTCGGTGGACCTGAAAAGCCGCGGCATCCGGGTCAATGCCATCAGTCCCGGCGTCGTGCCCACGCC CGGCTATAACACCAGCCTCGGAATGACGCAGGAAGTCGTGGACCAATTCGTCGAAAACGCCACCGGCACCATACCGCTGG GCCGTGCCGGAACGCCGGACGAGATCGCCAAAGCCGTTTTGTTTCTGGCCTCGGACGACAGCAGCTACATCACGGGCATC GAACTCTTCGTCGATGGCGGCCTTGCGCAAATCTGA
Upstream 100 bases:
>100_bases GGTTCGGATCAATAAGTCCTCGCGTTCCCATCGGTAGCCTGACTGAAAAAGGTGCATCGCGTCTGGCCACCTCACCATCC GATGAGGCGGGAGGGGCGAG
Downstream 100 bases:
>100_bases GTTTATTGCGCCGGGGCTGGGGTCGAGTCTTTCTTCACCCGCTTCAATTCCTTCTCGCGGTCAAGCACTGTGACGCCTTT ATCGATCCACGGCTTCGGCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSQRLAGKVAVITGGSSGLGLATAKRFIDEGAHVFITGRRQGELDAAVSQLGENATGVQGDIAKISDIEKWYAVVKQKKG AIDVLFANAGIGEFAPLGEITEEHFDKQFDVNVRGTLFSVQKALPLLRDGSSIVLNASIVSVKGNPAFSVYSATKAAIRS FARTWSVDLKSRGIRVNAISPGVVPTPGYNTSLGMTQEVVDQFVENATGTIPLGRAGTPDEIAKAVLFLASDDSSYITGI ELFVDGGLAQI
Sequences:
>Translated_251_residues MSQRLAGKVAVITGGSSGLGLATAKRFIDEGAHVFITGRRQGELDAAVSQLGENATGVQGDIAKISDIEKWYAVVKQKKG AIDVLFANAGIGEFAPLGEITEEHFDKQFDVNVRGTLFSVQKALPLLRDGSSIVLNASIVSVKGNPAFSVYSATKAAIRS FARTWSVDLKSRGIRVNAISPGVVPTPGYNTSLGMTQEVVDQFVENATGTIPLGRAGTPDEIAKAVLFLASDDSSYITGI ELFVDGGLAQI >Mature_250_residues SQRLAGKVAVITGGSSGLGLATAKRFIDEGAHVFITGRRQGELDAAVSQLGENATGVQGDIAKISDIEKWYAVVKQKKGA IDVLFANAGIGEFAPLGEITEEHFDKQFDVNVRGTLFSVQKALPLLRDGSSIVLNASIVSVKGNPAFSVYSATKAAIRSF ARTWSVDLKSRGIRVNAISPGVVPTPGYNTSLGMTQEVVDQFVENATGTIPLGRAGTPDEIAKAVLFLASDDSSYITGIE LFVDGGLAQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=35.2941176470588, Blast_Score=153, Evalue=1e-37, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=32.1705426356589, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=31.4516129032258, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=32.4528301886792, Blast_Score=113, Evalue=1e-25, Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=34.2245989304813, Blast_Score=111, Evalue=6e-25, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=32.9787234042553, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=33.201581027668, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=31.2252964426877, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=27.5590551181102, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=31.6205533596838, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=30.2631578947368, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=31.1787072243346, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI223718074, Length=208, Percent_Identity=32.6923076923077, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4503301, Length=249, Percent_Identity=28.5140562248996, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=34.9514563106796, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI83715985, Length=188, Percent_Identity=30.3191489361702, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=30.5699481865285, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=34.1269841269841, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=29.8804780876494, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.8548387096774, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=31.1475409836066, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=30.3643724696356, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=32.1285140562249, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=31.3492063492063, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=29.7619047619048, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=29.6, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=31.8548387096774, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=30.1960784313725, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=31.3186813186813, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786701, Length=209, Percent_Identity=29.1866028708134, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1788891, Length=238, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=24.4186046511628, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.906976744186, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=26.8292682926829, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=35.0393700787402, Blast_Score=141, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=36.6412213740458, Blast_Score=135, Evalue=2e-32, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=36.0153256704981, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=35.4477611940299, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=32.6923076923077, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=36.0902255639098, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=34.3511450381679, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=34.9809885931559, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=33.206106870229, Blast_Score=120, Evalue=5e-28, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=31.9230769230769, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=34.5381526104418, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=33.0677290836653, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=33.4677419354839, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=32.4427480916031, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=31.9230769230769, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=33.9622641509434, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=32.6923076923077, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=32.03125, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=32.4528301886792, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.1538461538462, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=33.6996336996337, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=31.6981132075472, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=29.2, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=27.9693486590038, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=27.6679841897233, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=29.6747967479675, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=27.2373540856031, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=28.6274509803922, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI212645366, Length=248, Percent_Identity=30.241935483871, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=27.734375, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567345, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193207185, Length=145, Percent_Identity=30.3448275862069, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538482, Length=115, Percent_Identity=37.3913043478261, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17568967, Length=247, Percent_Identity=28.7449392712551, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=28.2945736434109, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.8774703557312, Blast_Score=89, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6322227, Length=218, Percent_Identity=31.1926605504587, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=30.6451612903226, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=31.9796954314721, Blast_Score=72, Evalue=7e-14, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=35.7142857142857, Blast_Score=144, Evalue=7e-35, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=35.8870967741936, Blast_Score=144, Evalue=7e-35, Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=35.9183673469388, Blast_Score=137, Evalue=8e-33, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=35.1020408163265, Blast_Score=137, Evalue=9e-33, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=35.2, Blast_Score=124, Evalue=9e-29, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=33.0708661417323, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=35.0597609561753, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=33.4677419354839, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=28.2352941176471, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=24.8, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI281364494, Length=204, Percent_Identity=27.9411764705882, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648944, Length=199, Percent_Identity=31.6582914572864, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24663911, Length=249, Percent_Identity=25.3012048192771, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21356301, Length=201, Percent_Identity=25.8706467661692, Blast_Score=68, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26387; Mature: 26256
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRLAGKVAVITGGSSGLGLATAKRFIDEGAHVFITGRRQGELDAAVSQLGENATGVQG CCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC DIAKISDIEKWYAVVKQKKGAIDVLFANAGIGEFAPLGEITEEHFDKQFDVNVRGTLFSV CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEECCEECHHHHHH QKALPLLRDGSSIVLNASIVSVKGNPAFSVYSATKAAIRSFARTWSVDLKSRGIRVNAIS HHHHHHHCCCCEEEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHCEEHHHCCEEEEEEC PGVVPTPGYNTSLGMTQEVVDQFVENATGTIPLGRAGTPDEIAKAVLFLASDDSSYITGI CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHEEEEEECCCCCEEEEE ELFVDGGLAQI EEEECCCCCCC >Mature Secondary Structure SQRLAGKVAVITGGSSGLGLATAKRFIDEGAHVFITGRRQGELDAAVSQLGENATGVQG CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC DIAKISDIEKWYAVVKQKKGAIDVLFANAGIGEFAPLGEITEEHFDKQFDVNVRGTLFSV CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEECCEECHHHHHH QKALPLLRDGSSIVLNASIVSVKGNPAFSVYSATKAAIRSFARTWSVDLKSRGIRVNAIS HHHHHHHCCCCEEEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHCEEHHHCCEEEEEEC PGVVPTPGYNTSLGMTQEVVDQFVENATGTIPLGRAGTPDEIAKAVLFLASDDSSYITGI CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHEEEEEECCCCCEEEEE ELFVDGGLAQI EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]