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The map label for this gene is tdcF [C]

Identifier: 116625629

GI number: 116625629

Start: 8250938

End: 8251366

Strand: Reverse

Name: tdcF [C]

Synonym: Acid_6578

Alternate gene names: 116625629

Gene position: 8251366-8250938 (Counterclockwise)

Preceding gene: 116625638

Following gene: 116625627

Centisome position: 82.8

GC content: 57.81

Gene sequence:

>429_bases
ATGCGAAACCTCTGTGCGATTCTCATTTTGCTCGCTCTTCCGCTGGCCGCGGAGAGAAAGGTCATCAATCCTCCGGAATT
CGGGGCGGGGAGCCCGAACTTCAGCACCGCGGTACTGGCGGATGGCACGCTTTATATCGCGGGCCAAGTCGGCCAAGACC
TGAAGACCAAGCAGGTCCCGGCGGATTTCGAGAGCGAAGTCAAGTTACTGCTGACTAACATCGGGATCGTGCTGAAGGCG
GCGGGCATGAGTTACAAAGATGCGGTTTCCGTGCAGGTCTACCTTACCGATATGGATTTGTTCGCGCGGATGAATGGCGT
GTACACGACTTTCTTTCCCGAGCCGCGTCCGGCGCGGACTACGGTGGGGGTTACGAAACTGGCGCTGCCGAACGCGCACA
TCGAAATTACGGTTACGGCGCGCAAATAG

Upstream 100 bases:

>100_bases
AATGACGCGCCCGGGTTCGCCGCAGGCATGGGCATCCACCGCTGTAATCATGCTGGAAAATCGCAATCTTCACCTCACCC
TATATGCTACATTGCGCTCT

Downstream 100 bases:

>100_bases
GCGCAGTTGTGCCGTTAGTTGGGAGAATACTTGTTCGTTGCGGCGGCCGGGGACATACGGTCTTATCGCCGGGTGGGGCC
CGGCCGCCAGTGATTTGACT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MRNLCAILILLALPLAAERKVINPPEFGAGSPNFSTAVLADGTLYIAGQVGQDLKTKQVPADFESEVKLLLTNIGIVLKA
AGMSYKDAVSVQVYLTDMDLFARMNGVYTTFFPEPRPARTTVGVTKLALPNAHIEITVTARK

Sequences:

>Translated_142_residues
MRNLCAILILLALPLAAERKVINPPEFGAGSPNFSTAVLADGTLYIAGQVGQDLKTKQVPADFESEVKLLLTNIGIVLKA
AGMSYKDAVSVQVYLTDMDLFARMNGVYTTFFPEPRPARTTVGVTKLALPNAHIEITVTARK
>Mature_142_residues
MRNLCAILILLALPLAAERKVINPPEFGAGSPNFSTAVLADGTLYIAGQVGQDLKTKQVPADFESEVKLLLTNIGIVLKA
AGMSYKDAVSVQVYLTDMDLFARMNGVYTTFFPEPRPARTTVGVTKLALPNAHIEITVTARK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=39.2, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87082213, Length=87, Percent_Identity=34.4827586206897, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=38.0952380952381, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=38.0952380952381, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=108, Percent_Identity=37.962962962963, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=107, Percent_Identity=32.7102803738318, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15306; Mature: 15306

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLCAILILLALPLAAERKVINPPEFGAGSPNFSTAVLADGTLYIAGQVGQDLKTKQVP
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC
ADFESEVKLLLTNIGIVLKAAGMSYKDAVSVQVYLTDMDLFARMNGVYTTFFPEPRPART
CCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEEEEECHHHHHHCCCEEEEECCCCCCCCE
TVGVTKLALPNAHIEITVTARK
ECCEEEEECCCCEEEEEEEECC
>Mature Secondary Structure
MRNLCAILILLALPLAAERKVINPPEFGAGSPNFSTAVLADGTLYIAGQVGQDLKTKQVP
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC
ADFESEVKLLLTNIGIVLKAAGMSYKDAVSVQVYLTDMDLFARMNGVYTTFFPEPRPART
CCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEEEEECHHHHHHCCCEEEEECCCCCCCCE
TVGVTKLALPNAHIEITVTARK
ECCEEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]