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The map label for this gene is nusB

Identifier: 116625277

GI number: 116625277

Start: 7801599

End: 7802039

Strand: Reverse

Name: nusB

Synonym: Acid_6222

Alternate gene names: 116625277

Gene position: 7802039-7801599 (Counterclockwise)

Preceding gene: 116625278

Following gene: 116625276

Centisome position: 78.29

GC content: 61.9

Gene sequence:

>441_bases
ATGGCATCCCGCCGCAGAGCCAGGCAGCGCGCGCTGCAAATTCTCTTCATCTGGGATGCCCGCAAGCAGCCCGTGGAGGA
CGCGATCAACGCGTATTACGATACCCTGTACTCGGACGAGAAGCCGGAGCGCGACCCGTTCGTGATCGATCTGGTGCGAG
GTACGGTAGAGCACCTCGCCGAGGTGGATGATCGCATCACCCGGCATGCCGAGCACTGGCGGATGGAGCGAATGCCGGCG
GTGGATCGCAATATCCTTCGACTGGCAGTGTACGAAATGACCCGCGGCGGAACCCCGGCGCCGGTCACGATCGACGAGGC
GCTGGAACTGGCACGCAAGTTTTCCAACGAGGAATCGGTCCAATTCGTCAATGGGGTGCTGGACGCCGTGCGACGTGAAA
TGCCGGAGCCAAATGCTCCTCCGGCGCGTCTAAATTCCTAG

Upstream 100 bases:

>100_bases
CGACCGCGCGGGCGCCAAAGGCGGCAACAAGGGTTTTGACGCTGCCATGACCGCGATCGAGATGGCCAATCTCCTGCGCA
CGCTCCGGCAGGCGACCTAG

Downstream 100 bases:

>100_bases
TAAGGTATACTTCGCTCTAAGGACGGTTTCCCGAATGGCCCGAAGAAGGCGCTCCCTCTTTGTCTTACCCGTGATTGTTT
TCGCCTGCTCCATTGCAGGC

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MASRRRARQRALQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLAEVDDRITRHAEHWRMERMPA
VDRNILRLAVYEMTRGGTPAPVTIDEALELARKFSNEESVQFVNGVLDAVRREMPEPNAPPARLNS

Sequences:

>Translated_146_residues
MASRRRARQRALQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLAEVDDRITRHAEHWRMERMPA
VDRNILRLAVYEMTRGGTPAPVTIDEALELARKFSNEESVQFVNGVLDAVRREMPEPNAPPARLNS
>Mature_145_residues
ASRRRARQRALQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLAEVDDRITRHAEHWRMERMPAV
DRNILRLAVYEMTRGGTPAPVTIDEALELARKFSNEESVQFVNGVLDAVRREMPEPNAPPARLNS

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_SOLUE (Q01T72)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_827433.1
- ProteinModelPortal:   Q01T72
- SMR:   Q01T72
- STRING:   Q01T72
- GeneID:   4425558
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_6222
- NMPDR:   fig|234267.9.peg.5913
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16927; Mature: 16796

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRRRARQRALQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLA
CCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EVDDRITRHAEHWRMERMPAVDRNILRLAVYEMTRGGTPAPVTIDEALELARKFSNEESV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCHHH
QFVNGVLDAVRREMPEPNAPPARLNS
HHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ASRRRARQRALQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLA
CCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EVDDRITRHAEHWRMERMPAVDRNILRLAVYEMTRGGTPAPVTIDEALELARKFSNEESV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCHHH
QFVNGVLDAVRREMPEPNAPPARLNS
HHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA