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The map label for this gene is whiG [H]

Identifier: 116625262

GI number: 116625262

Start: 7785121

End: 7785888

Strand: Direct

Name: whiG [H]

Synonym: Acid_6207

Alternate gene names: 116625262

Gene position: 7785121-7785888 (Clockwise)

Preceding gene: 116625261

Following gene: 116625266

Centisome position: 78.12

GC content: 59.64

Gene sequence:

>768_bases
ATGAGCGCTACCAGTGTGTCTACCCGCAGCCAGTCAGAAGTATCGTTGCAGCAGCGCGATCAAATCGTGCTCGATCACCT
TCCGCTGGTCAAGGCGATTGCCATCCGAGTTCACGAGAACCTTCCGGTTCACGTGGATCTCGACGATCTGATTCACGCGG
GAGTCATGGGACTCTTCGACGCGGTTACCAAGTATGATGGCGACAAGAACGTGGCCTTTCACAGCTACGCGAAGCATCGC
ATCAAGGGCGCGATTCTCGATAGCCTTCGCCAGTTGGACTGGGCATCGCGCGATCTGCGCCGCCGTCAGAAGCAGGTGGA
GAGCGTGACCCGCGACCTGGGAGTGAAACTGGGCCGTTCGCCGCACGATAGCGAGATTGCCGAGCAGATGGGTGTAGGTC
TTGCGCGGTGGCGGCAGATGCAGATTGAAATGCGCACTGTCGGCCTGGTCTCCGCAACCCCGAACCCCGACCAGGACCGC
GAGCGCGCGCAAGAATTCCCCGCCAAACCGAACCTGCAACCCGACCGCATGTGCGAGCAGCGCCAATTGGAAAGTACGCT
GGCGCGGGCGATCGGCACCCTGCCGCTGCGCTATCAGAAGGTCGTCTTCCTGTACTACACGAACGATTTGACGATGAAAG
AGATCGGCGAAGTGCTGGGCGTCAACGAAAGTCGCGTCTCCCAGATTCACAAAATCGCCTTAAAGAAAATGGCCGGCGTC
CTGGAATCCGAAGGGATCCGCTCGGCGGAGGCGTTGTCGGTGGCATGA

Upstream 100 bases:

>100_bases
TATTTAACTATTAATACTAGGTGGCCTTAAACCTGCATTCTTAGGTTCCGTCGGACGAAGATCCGGCCTCCGAAAAAAGA
AACAAAAAGAGGACAGGAAC

Downstream 100 bases:

>100_bases
AAAAAGAAATATGGGCCACGGATGAACACGGCCAAAATCGTTCTTAGTCTGGCAGCGCAAACAGATAAGTCGTCAGGTTT
TCGAGGTCTCTGGGCGACAG

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSATSVSTRSQSEVSLQQRDQIVLDHLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFDAVTKYDGDKNVAFHSYAKHR
IKGAILDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRSPHDSEIAEQMGVGLARWRQMQIEMRTVGLVSATPNPDQDR
ERAQEFPAKPNLQPDRMCEQRQLESTLARAIGTLPLRYQKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKMAGV
LESEGIRSAEALSVA

Sequences:

>Translated_255_residues
MSATSVSTRSQSEVSLQQRDQIVLDHLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFDAVTKYDGDKNVAFHSYAKHR
IKGAILDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRSPHDSEIAEQMGVGLARWRQMQIEMRTVGLVSATPNPDQDR
ERAQEFPAKPNLQPDRMCEQRQLESTLARAIGTLPLRYQKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKMAGV
LESEGIRSAEALSVA
>Mature_254_residues
SATSVSTRSQSEVSLQQRDQIVLDHLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFDAVTKYDGDKNVAFHSYAKHRI
KGAILDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRSPHDSEIAEQMGVGLARWRQMQIEMRTVGLVSATPNPDQDRE
RAQEFPAKPNLQPDRMCEQRQLESTLARAIGTLPLRYQKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKMAGVL
ESEGIRSAEALSVA

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=219, Percent_Identity=39.7260273972603, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28670; Mature: 28539

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATSVSTRSQSEVSLQQRDQIVLDHLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH
AVTKYDGDKNVAFHSYAKHRIKGAILDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRS
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PHDSEIAEQMGVGLARWRQMQIEMRTVGLVSATPNPDQDRERAQEFPAKPNLQPDRMCEQ
CCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHH
RQLESTLARAIGTLPLRYQKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKMAGV
HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LESEGIRSAEALSVA
HHHCCCCCCHHHCCC
>Mature Secondary Structure 
SATSVSTRSQSEVSLQQRDQIVLDHLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH
AVTKYDGDKNVAFHSYAKHRIKGAILDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRS
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PHDSEIAEQMGVGLARWRQMQIEMRTVGLVSATPNPDQDRERAQEFPAKPNLQPDRMCEQ
CCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHH
RQLESTLARAIGTLPLRYQKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKMAGV
HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LESEGIRSAEALSVA
HHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]