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The map label for this gene is ycdK [C]

Identifier: 116625144

GI number: 116625144

Start: 7610289

End: 7610777

Strand: Direct

Name: ycdK [C]

Synonym: Acid_6082

Alternate gene names: 116625144

Gene position: 7610289-7610777 (Clockwise)

Preceding gene: 116625143

Following gene: 116625145

Centisome position: 76.37

GC content: 61.55

Gene sequence:

>489_bases
ATGACAATGACGGATGTATTAGAACGCATCGGCGCGACGGCCGAAGTGAAGAAACGGGCCATCAGCGCGCCTTCGGTCCT
CAACGAGGCACACCATTATGAGCGGCCCAGCTCATTTTCACGCGGCCTGCGCATCGACCTGAACGGCGTGACTATTCTGC
TGATTTCCGGCACCGCCGGCATCGACGAGAACGGAGTCTCTGTGCATGTGGGCGACCTGCGGGCGCAGCTGCGGCGCACG
TACCGGAACATCACGGAACTGCTGGCGAGCGAGGGCGCCACCTGGAAGGACATCGTGCGCACTACGTGCTATCTGCGAGA
TATCGAGCGCGACTACGCGGCCTTCAACGAGGAACGTACGGCCTTCTTCCGAGAGCAGGGGCTCGATCCGCTGCCGGCGT
CCACCGGTATCCAGGCGATTCTCTGCCGGCCAGAGTTGCTGGTGGAGATCGAAGCCATCGCCATGTTCACTCCGGTTCAG
GAGGATTGA

Upstream 100 bases:

>100_bases
ATTACACGTTCGGAATCGATTTTCAGGGCGAGGATCTATGGGTGGCCACCGCCAACGGCTTGAGCCACGGAATCCGAATC
CTACCAGGAGGTACCAGCAA

Downstream 100 bases:

>100_bases
GAATGCGCGACCTCGTCTTTGCCGTGGCGGCCCTGGCGCTGTGGTTCGGGGCCGCGCGCGCGCAGACTGTGCCCTGCCGG
GTCCCCGGCGCCAATGCCGT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: Endoribonuclease L-PSP Family; Endoribonuclease

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTMTDVLERIGATAEVKKRAISAPSVLNEAHHYERPSSFSRGLRIDLNGVTILLISGTAGIDENGVSVHVGDLRAQLRRT
YRNITELLASEGATWKDIVRTTCYLRDIERDYAAFNEERTAFFREQGLDPLPASTGIQAILCRPELLVEIEAIAMFTPVQ
ED

Sequences:

>Translated_162_residues
MTMTDVLERIGATAEVKKRAISAPSVLNEAHHYERPSSFSRGLRIDLNGVTILLISGTAGIDENGVSVHVGDLRAQLRRT
YRNITELLASEGATWKDIVRTTCYLRDIERDYAAFNEERTAFFREQGLDPLPASTGIQAILCRPELLVEIEAIAMFTPVQ
ED
>Mature_161_residues
TMTDVLERIGATAEVKKRAISAPSVLNEAHHYERPSSFSRGLRIDLNGVTILLISGTAGIDENGVSVHVGDLRAQLRRTY
RNITELLASEGATWKDIVRTTCYLRDIERDYAAFNEERTAFFREQGLDPLPASTGIQAILCRPELLVEIEAIAMFTPVQE
D

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18049; Mature: 17918

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMTDVLERIGATAEVKKRAISAPSVLNEAHHYERPSSFSRGLRIDLNGVTILLISGTAG
CCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCCEEEECCEEEEEEECCCC
IDENGVSVHVGDLRAQLRRTYRNITELLASEGATWKDIVRTTCYLRDIERDYAAFNEERT
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHH
AFFREQGLDPLPASTGIQAILCRPELLVEIEAIAMFTPVQED
HHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TMTDVLERIGATAEVKKRAISAPSVLNEAHHYERPSSFSRGLRIDLNGVTILLISGTAG
CHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCCEEEECCEEEEEEECCCC
IDENGVSVHVGDLRAQLRRTYRNITELLASEGATWKDIVRTTCYLRDIERDYAAFNEERT
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHH
AFFREQGLDPLPASTGIQAILCRPELLVEIEAIAMFTPVQED
HHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA