Click here to switch to the map view.

The map label for this gene is sgbU [C]

Identifier: 116625012

GI number: 116625012

Start: 7449827

End: 7450882

Strand: Direct

Name: sgbU [C]

Synonym: Acid_5942

Alternate gene names: 116625012

Gene position: 7449827-7450882 (Clockwise)

Preceding gene: 116625011

Following gene: 116625013

Centisome position: 74.76

GC content: 63.07

Gene sequence:

>1056_bases
ATGATGACTCGAAGACAGATTCTCGGGGCGGCCGGCGCCGCATCCGCGTGGATGGCGACGTGCAACGCGCAGGCGCAGAC
GGCGTCCAAAAGATTGGCGAACCTCGGCGGGGCTCCCGCGGGTTTCCCCATCCGCACACGCGCGGGGCGCGGCGGCGCTC
AACCCTTCGACTTCGTTACTCACTGCCACAACCTTGGCCTCGGCGTGGTGGAAACGCGGCTGCCCGGAACCGATGCCGAC
ACCATCAAGACCTTGCGGCAGAAGGTGGAAGGCTACCACATGCGCCTCATCCTCGATGTCGGCTACCCGCGCGATGAAGG
CGGGGTCGGCGTCTTCGACGCTTCGGTGAAGGCGGCCTCCGAGTGCGGCGCAATCTCCTTGCACGCGGCGATGACCGGGC
GCCGCTACGAGGACATGAACTCCTTCGAAGAGTTCCGCCAGAATTTCGAACGCTGCCAGAAATCGATCGCACTCGCCGAA
CCGATTCTGCGCAAGTACCGCATGCGGCTCGGAATCGAAAACCACAAGGGCTGGCGCTCCGCCGAGCAGGCCGCATGGCT
GAAGCGCGTGAGCAGCGAGTGGGTCGGCGTCCACTTCGATTTCGGCAATAACGTGGCGCTTTGCGAAGATCCGGCCGCGA
CCCTGCGCAACCTGCTGCCCTACACCTTCGCCTGCCACATCAAGGATATGGCCGTGGAGCCGTACCAGGATGGCTTCCTG
CTTTCCGAGGTGCCGCTCGGTGAGGGCTTCCTCGATATCAAGGGCATGGTGGCAACGCTGCGTCAGAAGGACCCGAACAT
GCCGTTCGACCTGGAAATGATCACGCGCGATCCGCTGAAGGTCCCGGTGCTCACCGACAAATACTGGGTGAGCTTCGACG
ATACTTACAGTCCCTTGCCGGGCCGGGACTTCGCCAGGATCGTGGCGCTGGTCAACCGGAACAAGCCCAAAGCGCCGCTG
CCGCGAACCACCGGGATGAGCCCGGAAGCACAGTTGAAGCTCGAAGACGAGTGCATCGCCAAATCGATCGAGTACGCGCG
GACAATTCTAGGATAA

Upstream 100 bases:

>100_bases
CACTTGCACTTTGACGCGCGGTCGCAGCGGGAGTTCGGACGCCGTTACGCGCTGGCGTTTCTGAGCATTGATGCGAGTTG
GGCGCATTAGGAGCAAGAAA

Downstream 100 bases:

>100_bases
GTCGCGCAACTCAAACTATGCCGCCATCGCTGTGTCGTGCGATGGCGTACCGCCGCCTCTGGTAAAATGGGGTTTAGCCT
CCCCAAAACAAAAACCATGA

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; Sugare Isomerase

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MMTRRQILGAAGAASAWMATCNAQAQTASKRLANLGGAPAGFPIRTRAGRGGAQPFDFVTHCHNLGLGVVETRLPGTDAD
TIKTLRQKVEGYHMRLILDVGYPRDEGGVGVFDASVKAASECGAISLHAAMTGRRYEDMNSFEEFRQNFERCQKSIALAE
PILRKYRMRLGIENHKGWRSAEQAAWLKRVSSEWVGVHFDFGNNVALCEDPAATLRNLLPYTFACHIKDMAVEPYQDGFL
LSEVPLGEGFLDIKGMVATLRQKDPNMPFDLEMITRDPLKVPVLTDKYWVSFDDTYSPLPGRDFARIVALVNRNKPKAPL
PRTTGMSPEAQLKLEDECIAKSIEYARTILG

Sequences:

>Translated_351_residues
MMTRRQILGAAGAASAWMATCNAQAQTASKRLANLGGAPAGFPIRTRAGRGGAQPFDFVTHCHNLGLGVVETRLPGTDAD
TIKTLRQKVEGYHMRLILDVGYPRDEGGVGVFDASVKAASECGAISLHAAMTGRRYEDMNSFEEFRQNFERCQKSIALAE
PILRKYRMRLGIENHKGWRSAEQAAWLKRVSSEWVGVHFDFGNNVALCEDPAATLRNLLPYTFACHIKDMAVEPYQDGFL
LSEVPLGEGFLDIKGMVATLRQKDPNMPFDLEMITRDPLKVPVLTDKYWVSFDDTYSPLPGRDFARIVALVNRNKPKAPL
PRTTGMSPEAQLKLEDECIAKSIEYARTILG
>Mature_351_residues
MMTRRQILGAAGAASAWMATCNAQAQTASKRLANLGGAPAGFPIRTRAGRGGAQPFDFVTHCHNLGLGVVETRLPGTDAD
TIKTLRQKVEGYHMRLILDVGYPRDEGGVGVFDASVKAASECGAISLHAAMTGRRYEDMNSFEEFRQNFERCQKSIALAE
PILRKYRMRLGIENHKGWRSAEQAAWLKRVSSEWVGVHFDFGNNVALCEDPAATLRNLLPYTFACHIKDMAVEPYQDGFL
LSEVPLGEGFLDIKGMVATLRQKDPNMPFDLEMITRDPLKVPVLTDKYWVSFDDTYSPLPGRDFARIVALVNRNKPKAPL
PRTTGMSPEAQLKLEDECIAKSIEYARTILG

Specific function: Isomerization Of D-Arabino-6-Hexulose 3-Phosphate To D-Fructose 6-Phosphate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.-.-.- [C]

Molecular weight: Translated: 38896; Mature: 38896

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTRRQILGAAGAASAWMATCNAQAQTASKRLANLGGAPAGFPIRTRAGRGGAQPFDFVT
CCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHH
HCHNLGLGVVETRLPGTDADTIKTLRQKVEGYHMRLILDVGYPRDEGGVGVFDASVKAAS
HHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEECCHHHHH
ECGAISLHAAMTGRRYEDMNSFEEFRQNFERCQKSIALAEPILRKYRMRLGIENHKGWRS
HCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AEQAAWLKRVSSEWVGVHFDFGNNVALCEDPAATLRNLLPYTFACHIKDMAVEPYQDGFL
HHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHHHHCCHHEEEEHHHCCCCCCCCCEE
LSEVPLGEGFLDIKGMVATLRQKDPNMPFDLEMITRDPLKVPVLTDKYWVSFDDTYSPLP
EEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCEEEEECCCCCCCC
GRDFARIVALVNRNKPKAPLPRTTGMSPEAQLKLEDECIAKSIEYARTILG
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMTRRQILGAAGAASAWMATCNAQAQTASKRLANLGGAPAGFPIRTRAGRGGAQPFDFVT
CCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHH
HCHNLGLGVVETRLPGTDADTIKTLRQKVEGYHMRLILDVGYPRDEGGVGVFDASVKAAS
HHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEECCHHHHH
ECGAISLHAAMTGRRYEDMNSFEEFRQNFERCQKSIALAEPILRKYRMRLGIENHKGWRS
HCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AEQAAWLKRVSSEWVGVHFDFGNNVALCEDPAATLRNLLPYTFACHIKDMAVEPYQDGFL
HHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHHHHCCHHEEEEHHHCCCCCCCCCEE
LSEVPLGEGFLDIKGMVATLRQKDPNMPFDLEMITRDPLKVPVLTDKYWVSFDDTYSPLP
EEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCEEEEECCCCCCCC
GRDFARIVALVNRNKPKAPLPRTTGMSPEAQLKLEDECIAKSIEYARTILG
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA