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The map label for this gene is xynB [H]

Identifier: 116624723

GI number: 116624723

Start: 7079782

End: 7081428

Strand: Direct

Name: xynB [H]

Synonym: Acid_5647

Alternate gene names: 116624723

Gene position: 7079782-7081428 (Clockwise)

Preceding gene: 116624722

Following gene: 116624724

Centisome position: 71.04

GC content: 64.12

Gene sequence:

>1647_bases
ATGACGATCCGCAATCCGATCCTGCCGGGATTCAATCCCGACCCGTCGATTCTTCGCGTCGGCGACGACTACTACATCGC
CACTTCCACGTTCGAGTGGTTCCCCGGAGTGCAGATCCACCACTCGCGCGACCTGGTTCACTGGCGATTGCTGGCGCGGC
CCCTGACGCGCGCCAGTCAGCTCAACATGCTTGGCGATCCCGATTCCTGCGGCGTTTGGGCGCCCTGCCTGAGCTACTCC
GAGGGCCTATTCTACCTGGTGTATACCGACGTCAAACGCTATGGGCGCACCACGCAGGGAGGCAACTCCGGCGCGTCGCT
GCGCGACCTGCATAACTACATCGTGACGAGTCCGCGGATCGACGGCGAATGGTCGGACCCGGTCTACGTGAACAGCAGCG
GCTTCGACCCCTCGCTCTTCCATGATGACGACGGCCGCAAGTACATTCTCAATATGCTGTGGGACCACCGGCCCGGCTCC
AATCGCTTCGCCGGAATTGTGCTGCAGGAATACTCGCACACGGAACGCAAGCTGGTGGGCCGTCAACACCTGATCTTCAC
CGGTACTTCGATCGGCTTCACCGAGGGTCCGCATCTCTACAAGCGCGAGGGCTACTACTATTTGTTGACCGCCGAGGGCG
GCACCGGTTGGGGGCACGCGGTCACGATGGCGCGCTCGCGCGAGTTGACCGGACCCTACGAACTCCATCCCGATACCTAC
GTTCTCACTTCGCGCCATCGTCCGGACATCGAACTGCAGCGCGCCGGACATGCCGACCTGGTGGAAACGCAGTCCGGCGA
CACCTACATGGTGCATCTCTGCGGCCGTCCGCTGCGCAATCGCGGACGCTGCACGCTGGGACGCGAGACCGCGATCCAGA
AGATGCAGTGGTCGTCCGACGGCTGGCTGCGCACAGTGGATGGCCAAGGACTGCCGTACATCGAGATGCCCGCGCCGGCG
CTTCCCGCGTATCCGTTCCCCGAACAGCCCGCGCGCCACGATTTCGACGAGCCTGTTCTGCCGTTGGATTTCCAGTGGCT
GCGATCGCCCGCGCCCGGCGAACTTTTCAGCCTGACCGAGCGTTCCGGGCACCTGCGCCTGTATGGCCGCGAGACCATGG
GCAGCCTGTTCCATCAGGCGCTGGTGGCACGCCGCCAACAGTCGCACTGCTACGCCGCAGAGACCGCGGTGGATTTCGAG
CCCCTCGAATTCCAGCAGATGGCCGGGTTGATCTGCTATTACAACGGCAGCAAGTTTCACTACCTTTATCTCTCGCACGA
CGCCGCGTTGGGAAAGCACCTCCGCGTGATGTCATGCCTGCCCGACCAGCTTCAGTCCGACGCGTTCACCGCGCCGGTCC
CGATTCCGGCCGGAGTGCCGGTGCATCTGCGCGTCGAGATCGACTACGAGCGGCTGTATTTCGCGTGGCGCGTGGAGCCT
GGGGAGTGGCGCCGTGTGCCCGGCCAGTTCGATGCCAGCATCCTCTCGGACGAAGCCGGGCCCCCCGGAAATCCCAATTT
CACCGGCGCCTTCGTCGGCATGTGTTGCCAGGACCTCTCCGGCGCGCGCCGCCCCGCGGATTTCGATTACTTCGCGTACC
GCGAGCGAGGCTACCAGGCCGATCCCTTTGGGGAGGGGGCATCATGA

Upstream 100 bases:

>100_bases
CAACCGTTGGCTATACGCCGTTCTTCGTCTGCCTGGGCGTGCTCGATCTGTTCGGCGCCGTGGTGCTTTGGACCGTGGTC
CGCGAGCGCAACTTCTCGAT

Downstream 100 bases:

>100_bases
TAGCAACGCCATTGATGCTATGATGCGAGTATGCGCACCACGGTCACGCTGGACCCGGATGTCGAGCGCGCGCTGAAAGC
CACAATGCGAACCCGCGGAG

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 548; Mature: 547

Protein sequence:

>548_residues
MTIRNPILPGFNPDPSILRVGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLARPLTRASQLNMLGDPDSCGVWAPCLSYS
EGLFYLVYTDVKRYGRTTQGGNSGASLRDLHNYIVTSPRIDGEWSDPVYVNSSGFDPSLFHDDDGRKYILNMLWDHRPGS
NRFAGIVLQEYSHTERKLVGRQHLIFTGTSIGFTEGPHLYKREGYYYLLTAEGGTGWGHAVTMARSRELTGPYELHPDTY
VLTSRHRPDIELQRAGHADLVETQSGDTYMVHLCGRPLRNRGRCTLGRETAIQKMQWSSDGWLRTVDGQGLPYIEMPAPA
LPAYPFPEQPARHDFDEPVLPLDFQWLRSPAPGELFSLTERSGHLRLYGRETMGSLFHQALVARRQQSHCYAAETAVDFE
PLEFQQMAGLICYYNGSKFHYLYLSHDAALGKHLRVMSCLPDQLQSDAFTAPVPIPAGVPVHLRVEIDYERLYFAWRVEP
GEWRRVPGQFDASILSDEAGPPGNPNFTGAFVGMCCQDLSGARRPADFDYFAYRERGYQADPFGEGAS

Sequences:

>Translated_548_residues
MTIRNPILPGFNPDPSILRVGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLARPLTRASQLNMLGDPDSCGVWAPCLSYS
EGLFYLVYTDVKRYGRTTQGGNSGASLRDLHNYIVTSPRIDGEWSDPVYVNSSGFDPSLFHDDDGRKYILNMLWDHRPGS
NRFAGIVLQEYSHTERKLVGRQHLIFTGTSIGFTEGPHLYKREGYYYLLTAEGGTGWGHAVTMARSRELTGPYELHPDTY
VLTSRHRPDIELQRAGHADLVETQSGDTYMVHLCGRPLRNRGRCTLGRETAIQKMQWSSDGWLRTVDGQGLPYIEMPAPA
LPAYPFPEQPARHDFDEPVLPLDFQWLRSPAPGELFSLTERSGHLRLYGRETMGSLFHQALVARRQQSHCYAAETAVDFE
PLEFQQMAGLICYYNGSKFHYLYLSHDAALGKHLRVMSCLPDQLQSDAFTAPVPIPAGVPVHLRVEIDYERLYFAWRVEP
GEWRRVPGQFDASILSDEAGPPGNPNFTGAFVGMCCQDLSGARRPADFDYFAYRERGYQADPFGEGAS
>Mature_547_residues
TIRNPILPGFNPDPSILRVGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLARPLTRASQLNMLGDPDSCGVWAPCLSYSE
GLFYLVYTDVKRYGRTTQGGNSGASLRDLHNYIVTSPRIDGEWSDPVYVNSSGFDPSLFHDDDGRKYILNMLWDHRPGSN
RFAGIVLQEYSHTERKLVGRQHLIFTGTSIGFTEGPHLYKREGYYYLLTAEGGTGWGHAVTMARSRELTGPYELHPDTYV
LTSRHRPDIELQRAGHADLVETQSGDTYMVHLCGRPLRNRGRCTLGRETAIQKMQWSSDGWLRTVDGQGLPYIEMPAPAL
PAYPFPEQPARHDFDEPVLPLDFQWLRSPAPGELFSLTERSGHLRLYGRETMGSLFHQALVARRQQSHCYAAETAVDFEP
LEFQQMAGLICYYNGSKFHYLYLSHDAALGKHLRVMSCLPDQLQSDAFTAPVPIPAGVPVHLRVEIDYERLYFAWRVEPG
EWRRVPGQFDASILSDEAGPPGNPNFTGAFVGMCCQDLSGARRPADFDYFAYRERGYQADPFGEGAS

Specific function: Beta-xylosidase is an intracellular xylan-degrading enzyme [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=554, Percent_Identity=45.1263537906137, Blast_Score=449, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 61984; Mature: 61853

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRNPILPGFNPDPSILRVGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLARPLTRASQ
CCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
LNMLGDPDSCGVWAPCLSYSEGLFYLVYTDVKRYGRTTQGGNSGASLRDLHNYIVTSPRI
CCCCCCCCCCCCHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHEECCCC
DGEWSDPVYVNSSGFDPSLFHDDDGRKYILNMLWDHRPGSNRFAGIVLQEYSHTERKLVG
CCCCCCCEEECCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHC
RQHLIFTGTSIGFTEGPHLYKREGYYYLLTAEGGTGWGHAVTMARSRELTGPYELHPDTY
CEEEEEECCCCCCCCCCCCEEECCEEEEEECCCCCCCCCEEEEECCCCCCCCEEECCCEE
VLTSRHRPDIELQRAGHADLVETQSGDTYMVHLCGRPLRNRGRCTLGRETAIQKMQWSSD
EEECCCCCCEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHCCCCC
GWLRTVDGQGLPYIEMPAPALPAYPFPEQPARHDFDEPVLPLDFQWLRSPAPGELFSLTE
CCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHEEECC
RSGHLRLYGRETMGSLFHQALVARRQQSHCYAAETAVDFEPLEFQQMAGLICYYNGSKFH
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHCCEEEEEECCEEE
YLYLSHDAALGKHLRVMSCLPDQLQSDAFTAPVPIPAGVPVHLRVEIDYERLYFAWRVEP
EEEEECCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCEEEEEEEEHEEEEEEEEECC
GEWRRVPGQFDASILSDEAGPPGNPNFTGAFVGMCCQDLSGARRPADFDYFAYRERGYQA
CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
DPFGEGAS
CCCCCCCC
>Mature Secondary Structure 
TIRNPILPGFNPDPSILRVGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLARPLTRASQ
CCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
LNMLGDPDSCGVWAPCLSYSEGLFYLVYTDVKRYGRTTQGGNSGASLRDLHNYIVTSPRI
CCCCCCCCCCCCHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHEECCCC
DGEWSDPVYVNSSGFDPSLFHDDDGRKYILNMLWDHRPGSNRFAGIVLQEYSHTERKLVG
CCCCCCCEEECCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHC
RQHLIFTGTSIGFTEGPHLYKREGYYYLLTAEGGTGWGHAVTMARSRELTGPYELHPDTY
CEEEEEECCCCCCCCCCCCEEECCEEEEEECCCCCCCCCEEEEECCCCCCCCEEECCCEE
VLTSRHRPDIELQRAGHADLVETQSGDTYMVHLCGRPLRNRGRCTLGRETAIQKMQWSSD
EEECCCCCCEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHCCCCC
GWLRTVDGQGLPYIEMPAPALPAYPFPEQPARHDFDEPVLPLDFQWLRSPAPGELFSLTE
CCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHEEECC
RSGHLRLYGRETMGSLFHQALVARRQQSHCYAAETAVDFEPLEFQQMAGLICYYNGSKFH
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHCCEEEEEECCEEE
YLYLSHDAALGKHLRVMSCLPDQLQSDAFTAPVPIPAGVPVHLRVEIDYERLYFAWRVEP
EEEEECCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCEEEEEEEEHEEEEEEEEECC
GEWRRVPGQFDASILSDEAGPPGNPNFTGAFVGMCCQDLSGARRPADFDYFAYRERGYQA
CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
DPFGEGAS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2440680; 1765080 [H]