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The map label for this gene is 116624581

Identifier: 116624581

GI number: 116624581

Start: 6900066

End: 6900608

Strand: Reverse

Name: 116624581

Synonym: Acid_5505

Alternate gene names: NA

Gene position: 6900608-6900066 (Counterclockwise)

Preceding gene: 116624582

Following gene: 116624580

Centisome position: 69.24

GC content: 63.72

Gene sequence:

>543_bases
ATGGCGGCGGTGATAATAATCCGGCAGAGCTCAGCCTGGCCGCAGACGATCGAGGAATTCGGCCGTCTGGTGGATGCCAC
ACAGGACGAACTGGTACATTTCGCGTTCTATCGCCTGGGCAACCAGGCCGATGCGGAGGACGTGGTTCAGGACGTTTACG
TGCAGGCATTCCGGGATCGCGCCCTTCGCAGGCATGTCACCGAGGTGCGGCCCTACCTGTTCCGTATGGTGCGCAACCGG
TGTACGGATGTGCTGCGCGGGCGATCGCGAAGCGGCGGGGAACCGGCCGAGGCGCTGGTAGATGGAGGCGACATGCTTTC
GGCGATCCTGGCGCGCGAAGAGGCGAGCGAGTTCGCGCGATTGCTGGAGGCGATTCCGGAGCGCGAGGCCGAAGTGATCC
GGCTGCGCGCCTGGAGCGAGCTCTCGTTCGCGGAGATTGCGATTGCGGTGGACGCGGCGGTTCCCACGGTGAAATCGCGA
TTCCGCTATGGCATCGACAAGCTCCGCCGGTTGTTGCACCAGGAAGGAGATGCGCAATCATGA

Upstream 100 bases:

>100_bases
CCCGCACCCGCGATCCAGGTTCTGCCGGTAAAATAAAACTTACGGATCTTAAATCTTTTTTACACGCCCGGCCGTTGTAA
GGTCGAAAGCTGCAATTCAA

Downstream 100 bases:

>100_bases
CCGAACCCGAAGAACAGGAAATCCTCCAGCGTATCCGGCCCGCCAGGAGAATCGCAGCTTCCAATTCATTTCGGGAGCGT
GTGATGAAGAACATTGCGGT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; Sigma Factor SigH; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-W Factor

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAAVIIIRQSSAWPQTIEEFGRLVDATQDELVHFAFYRLGNQADAEDVVQDVYVQAFRDRALRRHVTEVRPYLFRMVRNR
CTDVLRGRSRSGGEPAEALVDGGDMLSAILAREEASEFARLLEAIPEREAEVIRLRAWSELSFAEIAIAVDAAVPTVKSR
FRYGIDKLRRLLHQEGDAQS

Sequences:

>Translated_180_residues
MAAVIIIRQSSAWPQTIEEFGRLVDATQDELVHFAFYRLGNQADAEDVVQDVYVQAFRDRALRRHVTEVRPYLFRMVRNR
CTDVLRGRSRSGGEPAEALVDGGDMLSAILAREEASEFARLLEAIPEREAEVIRLRAWSELSFAEIAIAVDAAVPTVKSR
FRYGIDKLRRLLHQEGDAQS
>Mature_179_residues
AAVIIIRQSSAWPQTIEEFGRLVDATQDELVHFAFYRLGNQADAEDVVQDVYVQAFRDRALRRHVTEVRPYLFRMVRNRC
TDVLRGRSRSGGEPAEALVDGGDMLSAILAREEASEFARLLEAIPEREAEVIRLRAWSELSFAEIAIAVDAAVPTVKSRF
RYGIDKLRRLLHQEGDAQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20416; Mature: 20285

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVIIIRQSSAWPQTIEEFGRLVDATQDELVHFAFYRLGNQADAEDVVQDVYVQAFRDR
CCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ALRRHVTEVRPYLFRMVRNRCTDVLRGRSRSGGEPAEALVDGGDMLSAILAREEASEFAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
LLEAIPEREAEVIRLRAWSELSFAEIAIAVDAAVPTVKSRFRYGIDKLRRLLHQEGDAQS
HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AAVIIIRQSSAWPQTIEEFGRLVDATQDELVHFAFYRLGNQADAEDVVQDVYVQAFRDR
CEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ALRRHVTEVRPYLFRMVRNRCTDVLRGRSRSGGEPAEALVDGGDMLSAILAREEASEFAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
LLEAIPEREAEVIRLRAWSELSFAEIAIAVDAAVPTVKSRFRYGIDKLRRLLHQEGDAQS
HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA