BacMap

Definition	Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession	NC_008536
Length	9,965,640

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The map label for this gene is yohF [C]

Identifier: 116624568

GI number: 116624568

Start: 6887971

End: 6888714

Strand: Direct

Name: yohF [C]

Synonym: Acid_5492

Alternate gene names: 116624568

Gene position: 6887971-6888714 (Clockwise)

Preceding gene: 116624565

Following gene: 116624571

Centisome position: 69.12

GC content: 65.59

Gene sequence:

>744_bases
ATGTCGAATCAGAAAGTCGCGCTCGTGACCGGCGCGGGCAGCGGAATCGGGCGCGCGGTGGCACTCGCGCTCCACACGGC
CGGCTTCCATGTGGCGCTTGCCGGAAGGCGTCTGGCCGAGCTCGAGCGCACCGCCGCCGGGTCCGCCGGCATGCTGCCGG
TGGCCAGCGATGTGAGGTCGCAAGAGAGCGTCCGCGCTCTGTTCGCCAAAACAAAAAACGTGTTCGGCCGCCTGGACCTG
CTGTTCAACAATGCGGGCATCAATGCACCCGCGGTCCCGATGGAGGACCTCAACCTCGAGCAGTGGAACGCCGTGGTGAG
CGTCAACTTGACCGGCGCTTTCCTCTGCGCGCAGGAAGCCATCCGCCTGATGAAGGCGCAATCGCCGCAAGGCGGCCGCA
TCATCAACAATGGTTCGATCTCCGCCCACGTGCCGCGCCCCAACTCCGCACCCTACACCGCCACCAAGCACGCGATCACC
GGCCTCACGCGGAGTATCTCGCTGGATGGACGGCGGCACAATATCGCCTGTGGCCAAATCGATATCGGCAACGCCGCCAC
GGAAATGACCGAGCGCATGACCGCGGGCGTGGCGCAGGCCAACGGCACGATGGCGGAAGAGCCGCGCATGGACGTGCGCC
ACGTGGCCGATGCCGTGTTGTACATGGCGCAGCTCCCGCTCGATGCCAACGTTCAGTTCATGACCGTCATGGCGACCCGT
ATGCCCTTCATCGGCCGCGGATAA

Upstream 100 bases:

>100_bases
AAAAAGCGCGAATACTGCAATCAGTTTGGTACACATGAGTGGTTAGGATCATGATAGCCGAAGCCGCCTGCCCCGTTATT
TCGGGCACAATGAGGATACT

Downstream 100 bases:

>100_bases
CGTCTATACCGCGACGCTCGCCATCACCTGAAGGGCAGCCTTGCAAAACGCGGGAAGGTCTTCGGGCTTGCGGCTCGTGA
CCAGGTTGCCATCCACCACC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSNQKVALVTGAGSGIGRAVALALHTAGFHVALAGRRLAELERTAAGSAGMLPVASDVRSQESVRALFAKTKNVFGRLDL
LFNNAGINAPAVPMEDLNLEQWNAVVSVNLTGAFLCAQEAIRLMKAQSPQGGRIINNGSISAHVPRPNSAPYTATKHAIT
GLTRSISLDGRRHNIACGQIDIGNAATEMTERMTAGVAQANGTMAEEPRMDVRHVADAVLYMAQLPLDANVQFMTVMATR
MPFIGRG

Sequences:

>Translated_247_residues
MSNQKVALVTGAGSGIGRAVALALHTAGFHVALAGRRLAELERTAAGSAGMLPVASDVRSQESVRALFAKTKNVFGRLDL
LFNNAGINAPAVPMEDLNLEQWNAVVSVNLTGAFLCAQEAIRLMKAQSPQGGRIINNGSISAHVPRPNSAPYTATKHAIT
GLTRSISLDGRRHNIACGQIDIGNAATEMTERMTAGVAQANGTMAEEPRMDVRHVADAVLYMAQLPLDANVQFMTVMATR
MPFIGRG
>Mature_246_residues
SNQKVALVTGAGSGIGRAVALALHTAGFHVALAGRRLAELERTAAGSAGMLPVASDVRSQESVRALFAKTKNVFGRLDLL
FNNAGINAPAVPMEDLNLEQWNAVVSVNLTGAFLCAQEAIRLMKAQSPQGGRIINNGSISAHVPRPNSAPYTATKHAITG
LTRSISLDGRRHNIACGQIDIGNAATEMTERMTAGVAQANGTMAEEPRMDVRHVADAVLYMAQLPLDANVQFMTVMATRM
PFIGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI31542939, Length=188, Percent_Identity=37.2340425531915, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=38.2352941176471, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=30.4166666666667, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=30.4878048780488, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI15277342, Length=236, Percent_Identity=31.3559322033898, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI40254992, Length=227, Percent_Identity=30.3964757709251, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI209862901, Length=204, Percent_Identity=31.8627450980392, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI19923983, Length=204, Percent_Identity=31.8627450980392, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI19923817, Length=207, Percent_Identity=29.4685990338164, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI59889578, Length=166, Percent_Identity=27.710843373494, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI32483357, Length=175, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7705925, Length=219, Percent_Identity=29.6803652968037, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=28.042328042328, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7706318, Length=170, Percent_Identity=30, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=27.7551020408163, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1788459, Length=195, Percent_Identity=36.9230769230769, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI2367175, Length=235, Percent_Identity=32.3404255319149, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789057, Length=186, Percent_Identity=33.8709677419355, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789208, Length=195, Percent_Identity=31.2820512820513, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=31.25, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790717, Length=193, Percent_Identity=31.6062176165803, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787335, Length=228, Percent_Identity=30.7017543859649, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789378, Length=181, Percent_Identity=32.5966850828729, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786701, Length=211, Percent_Identity=32.2274881516588, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786812, Length=185, Percent_Identity=32.4324324324324, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=25.5060728744939, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=194, Percent_Identity=27.319587628866, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=237, Percent_Identity=31.2236286919831, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=191, Percent_Identity=36.1256544502618, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=234, Percent_Identity=32.9059829059829, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=32.1782178217822, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=222, Percent_Identity=28.3783783783784, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=238, Percent_Identity=27.7310924369748, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=203, Percent_Identity=30.5418719211823, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=224, Percent_Identity=30.8035714285714, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=30.1980198019802, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=201, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=178, Percent_Identity=33.7078651685393, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=31, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=231, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=226, Percent_Identity=24.3362831858407, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=178, Percent_Identity=32.0224719101124, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=177, Percent_Identity=29.9435028248588, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=204, Percent_Identity=29.9019607843137, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=228, Percent_Identity=26.7543859649123, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18859837, Length=203, Percent_Identity=34.4827586206897, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI23397609, Length=233, Percent_Identity=30.4721030042918, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=27.4900398406374, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17737361, Length=182, Percent_Identity=35.1648351648352, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281364494, Length=245, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24648944, Length=249, Percent_Identity=28.5140562248996, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24641232, Length=170, Percent_Identity=35.2941176470588, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24644339, Length=232, Percent_Identity=27.1551724137931, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643142, Length=222, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007238, Length=169, Percent_Identity=31.3609467455621, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=26.6393442622951, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24580925, Length=182, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24641388, Length=248, Percent_Identity=27.0161290322581, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007234, Length=254, Percent_Identity=27.5590551181102, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355319, Length=172, Percent_Identity=29.0697674418605, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21358495, Length=218, Percent_Identity=29.3577981651376, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355631, Length=191, Percent_Identity=27.2251308900524, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24639444, Length=198, Percent_Identity=32.3232323232323, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=27.1604938271605, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26086; Mature: 25955

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQKVALVTGAGSGIGRAVALALHTAGFHVALAGRRLAELERTAAGSAGMLPVASDVRS
CCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHH
QESVRALFAKTKNVFGRLDLLFNNAGINAPAVPMEDLNLEQWNAVVSVNLTGAFLCAQEA
HHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHH
IRLMKAQSPQGGRIINNGSISAHVPRPNSAPYTATKHAITGLTRSISLDGRRHNIACGQI
HHHHHCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHEEEECCCCCCEEECEE
DIGNAATEMTERMTAGVAQANGTMAEEPRMDVRHVADAVLYMAQLPLDANVQFMTVMATR
ECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH
MPFIGRG
CCCCCCC
>Mature Secondary Structure 
SNQKVALVTGAGSGIGRAVALALHTAGFHVALAGRRLAELERTAAGSAGMLPVASDVRS
CCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHH
QESVRALFAKTKNVFGRLDLLFNNAGINAPAVPMEDLNLEQWNAVVSVNLTGAFLCAQEA
HHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHH
IRLMKAQSPQGGRIINNGSISAHVPRPNSAPYTATKHAITGLTRSISLDGRRHNIACGQI
HHHHHCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHEEEECCCCCCEEECEE
DIGNAATEMTERMTAGVAQANGTMAEEPRMDVRHVADAVLYMAQLPLDANVQFMTVMATR
ECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH
MPFIGRG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]