Click here to switch to the map view.

The map label for this gene is 116624480

Identifier: 116624480

GI number: 116624480

Start: 6767778

End: 6768650

Strand: Reverse

Name: 116624480

Synonym: Acid_5402

Alternate gene names: NA

Gene position: 6768650-6767778 (Counterclockwise)

Preceding gene: 116624481

Following gene: 116624477

Centisome position: 67.92

GC content: 58.42

Gene sequence:

>873_bases
ATGCAGATGATGCGCTTTTGTTTCCAGGTGCTCGCTTGCGCAAGTCTGTTATCCGCACAGGGCGGTCCTGACGGCGGCAA
GGTGCTCACCACTTTCCAGAACCCTGTCGGCGACCTCATTAGCGTCCCATTTCAGAACAACATCAACTTTCCAATCGGCG
AGTTTAGCCGCATTCAGGATGTGCTCAACATTCAGCCCGTGGTCCCCATTAAGCTTAGCGAGGACTGGTTACTCATTTCA
CGATGGATCATGCCGGTCGTCTATCAGCCGAACCTGGGATCTGCCTGCCGGTCGAGTGGTCCGACAGCCGCCGATGTGTG
CGATTTCCGGGAACGAAACTCCGCGCCGGACGGAGGAGCCAACGGACTCGGCGACATCAATCCGACATTCTTCCTGTCCC
CAACCCATCCCGGCAAACTGATCTGGGGCTTCGGGCCAACCTTCCTGGCGCCGACTGCTACCGACGCAACGCTCGGGCAG
GGCAAGTGGGGCGCGGGCCCATCCGTTGTCCTGCTCGTCCAGCCGAAACACTGGACCGTCGGAGTCCTGGCCAACAATAT
CTGGTCCTTCGCCGGCAATCAGGGACGCCCGCGGGTGAATCAGTTTCTGACCCAGTACTTCATAACTCGGAATTTCGAGC
ATGGTTGGTTCCTGACGTCGGCGCCGATCCTCACGGCGAACTGGCGTGCCCCCAGTGACAATCAGTGGCTTGTTCCCTTT
GGCGGCGGCTTCGGAAAAATGACGCGGTTGTTTAGCCAGCCGATGGTCTGGCAGATGCATCTCTACTACAACGCTGTCCA
TCCAAGCGACCTGCCTTACCCGAAGTGGCAAGTGCGCCTTCAGGTGGCTCTGTTATTCCCGTCCCAAAAGTGA

Upstream 100 bases:

>100_bases
GCAACCCGTTTTCGATGGACACCTGTCTGGCGTCGTGCTCGGCGTTACCTTCAATCTCAAGTAAGGCTCACCGTCGCAAT
TCGTCAGTGAGGTGAACCAT

Downstream 100 bases:

>100_bases
CGTCTTCAGCAGATACTGATCGCGTCTCGAGTCTCGACGCAGGTCACAGCAACTTGCGAAAGTAAGCGGCAGACTCGTGA
TAACCGATTGACGTGTAGAA

Product: putative neuromedin U

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MQMMRFCFQVLACASLLSAQGGPDGGKVLTTFQNPVGDLISVPFQNNINFPIGEFSRIQDVLNIQPVVPIKLSEDWLLIS
RWIMPVVYQPNLGSACRSSGPTAADVCDFRERNSAPDGGANGLGDINPTFFLSPTHPGKLIWGFGPTFLAPTATDATLGQ
GKWGAGPSVVLLVQPKHWTVGVLANNIWSFAGNQGRPRVNQFLTQYFITRNFEHGWFLTSAPILTANWRAPSDNQWLVPF
GGGFGKMTRLFSQPMVWQMHLYYNAVHPSDLPYPKWQVRLQVALLFPSQK

Sequences:

>Translated_290_residues
MQMMRFCFQVLACASLLSAQGGPDGGKVLTTFQNPVGDLISVPFQNNINFPIGEFSRIQDVLNIQPVVPIKLSEDWLLIS
RWIMPVVYQPNLGSACRSSGPTAADVCDFRERNSAPDGGANGLGDINPTFFLSPTHPGKLIWGFGPTFLAPTATDATLGQ
GKWGAGPSVVLLVQPKHWTVGVLANNIWSFAGNQGRPRVNQFLTQYFITRNFEHGWFLTSAPILTANWRAPSDNQWLVPF
GGGFGKMTRLFSQPMVWQMHLYYNAVHPSDLPYPKWQVRLQVALLFPSQK
>Mature_290_residues
MQMMRFCFQVLACASLLSAQGGPDGGKVLTTFQNPVGDLISVPFQNNINFPIGEFSRIQDVLNIQPVVPIKLSEDWLLIS
RWIMPVVYQPNLGSACRSSGPTAADVCDFRERNSAPDGGANGLGDINPTFFLSPTHPGKLIWGFGPTFLAPTATDATLGQ
GKWGAGPSVVLLVQPKHWTVGVLANNIWSFAGNQGRPRVNQFLTQYFITRNFEHGWFLTSAPILTANWRAPSDNQWLVPF
GGGFGKMTRLFSQPMVWQMHLYYNAVHPSDLPYPKWQVRLQVALLFPSQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32120; Mature: 32120

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMMRFCFQVLACASLLSAQGGPDGGKVLTTFQNPVGDLISVPFQNNINFPIGEFSRIQD
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCCCCHHHHHHH
VLNIQPVVPIKLSEDWLLISRWIMPVVYQPNLGSACRSSGPTAADVCDFRERNSAPDGGA
HHCCCCEEEEEECCCHHHHHHHHHHEEECCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCC
NGLGDINPTFFLSPTHPGKLIWGFGPTFLAPTATDATLGQGKWGAGPSVVLLVQPKHWTV
CCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
GVLANNIWSFAGNQGRPRVNQFLTQYFITRNFEHGWFLTSAPILTANWRAPSDNQWLVPF
EHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCCEEEEEE
GGGFGKMTRLFSQPMVWQMHLYYNAVHPSDLPYPKWQVRLQVALLFPSQK
CCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCC
>Mature Secondary Structure
MQMMRFCFQVLACASLLSAQGGPDGGKVLTTFQNPVGDLISVPFQNNINFPIGEFSRIQD
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCCCCHHHHHHH
VLNIQPVVPIKLSEDWLLISRWIMPVVYQPNLGSACRSSGPTAADVCDFRERNSAPDGGA
HHCCCCEEEEEECCCHHHHHHHHHHEEECCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCC
NGLGDINPTFFLSPTHPGKLIWGFGPTFLAPTATDATLGQGKWGAGPSVVLLVQPKHWTV
CCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
GVLANNIWSFAGNQGRPRVNQFLTQYFITRNFEHGWFLTSAPILTANWRAPSDNQWLVPF
EHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCCEEEEEE
GGGFGKMTRLFSQPMVWQMHLYYNAVHPSDLPYPKWQVRLQVALLFPSQK
CCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA