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The map label for this gene is 116624379

Identifier: 116624379

GI number: 116624379

Start: 6638642

End: 6639895

Strand: Direct

Name: 116624379

Synonym: Acid_5300

Alternate gene names: NA

Gene position: 6638642-6639895 (Clockwise)

Preceding gene: 116624372

Following gene: 116624382

Centisome position: 66.62

GC content: 69.06

Gene sequence:

>1254_bases
GTGGATGCGGGGAGGGTGGTGGAGGAGGTTTACCGCAACGATTGGGGGCGGATTGTCGCGACCCTGATCGGGCTGGTCGG
AGACTTCGACCTGGCGGAAGAGGCCGCCCAGGAGGCCTTCACGGCGGCGGTGGACCAGTGGAGCCTGGACGGGGTGCCGG
AGTATCCGCGCGCCTGGATCGTACAGACAGCGCGGTACAAGGCGATCGACCGGATGCGGCGGCGGTCGCGGTGGGAAGAA
AGCCTGGAAGCGCGCGATGGCGCGACGCTGACCCACGCGATCCAGGCGCCGGAGGCCTTCGCGGGCGAGATCCCGGACGA
CCGGCTGCGGCTGATCTTCACATGCTGCCATCCGGCGCTGGCGCTGGAGTCGCAGGTGGCGCTGGCACTGCGCACACTAT
GCGGGCTGGAGACGGACGAGATCGCACGCGCCTTCCTGGTGCCGCAGACGACAATGGCGCAGCGGCTGGTGCGGGCGAAG
CGCAAGATCCGCGACGCCGGAATTCCGTACGCGGTGCCGGAGACGCGGGAGATGCCGGACCGCATCGACGCAGTGCTCAC
TGTGATCTACCTGGTGTTCAACGAGGGTTACGCGGCGACACGCGGCGGGCCGCTGGTGCGGACGGATTTAAGCTCGGAAG
CGATCCGGCTGGGCCGTCTGGTGCGCAGCCTTATGAAGCCGCGTCCCCCGGCGGAGGCGACGGCGCTGTTGGCCTTGATG
CTGTTGCAGGATGCGCGGCGCGATGCGCGCCTGGACGCGGCCGGCGATGTGGTGGTGCTGGAAGAACAGGATCGCGGGCG
GTGGAACCAGGCCCAGATCGCGGAGGCGCTGCCGCTGGTGACGGAGGCGCTGCGCGGGGGCGGCGGGGCGTTCGCGGTGC
AGGCCGCGATCGCGGCCGTGCATTGCCGCGCGGCGCGGCCGGAGGACACGGACTGGCCCCAAATTGTCCGGCTCTACAAT
GTGCTGGAAGAGATGCAGCCTTCACCGGTGGTGAGTCTAAATCGCGCGGTGGCGGTGGCGATGGCCGAAGGTCCGGAGTC
GGCGCTGGCGATCATCGACACCCTCGAGAAGGAGTTGGACGGGTATCATTTACTGCATGCGGCGCGGGCCGACCTGCTGC
GCCGGGCGGGGCGGTACTCCGAGGCCGCGGGAAGCTACGCCCGGGCGCTCGCGCTCGTGACCAATGACAGCGAAAGGCGG
TATCTGGAGAGGCGTGCGGGTGAAGTGAAGATGGCCGCGAGCGGACACGAATGA

Upstream 100 bases:

>100_bases
TTCATCGAATCCCTCTCTATGCAGGTATATCGAATAGCAGGGGTCAAAATCGACATCGGACAGAAATATTTTCGGGGGAC
GATAGAATTGGGGAATGGTT

Downstream 100 bases:

>100_bases
AGAAGACAACTTTTCATCCGCATTGATCCGTGTTCATCCGTGGCCTAATCGTCCTCCCCCAGAAAGCAGAATGGGCCGCG
GGTAAACACGGATCAACGCG

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MDAGRVVEEVYRNDWGRIVATLIGLVGDFDLAEEAAQEAFTAAVDQWSLDGVPEYPRAWIVQTARYKAIDRMRRRSRWEE
SLEARDGATLTHAIQAPEAFAGEIPDDRLRLIFTCCHPALALESQVALALRTLCGLETDEIARAFLVPQTTMAQRLVRAK
RKIRDAGIPYAVPETREMPDRIDAVLTVIYLVFNEGYAATRGGPLVRTDLSSEAIRLGRLVRSLMKPRPPAEATALLALM
LLQDARRDARLDAAGDVVVLEEQDRGRWNQAQIAEALPLVTEALRGGGGAFAVQAAIAAVHCRAARPEDTDWPQIVRLYN
VLEEMQPSPVVSLNRAVAVAMAEGPESALAIIDTLEKELDGYHLLHAARADLLRRAGRYSEAAGSYARALALVTNDSERR
YLERRAGEVKMAASGHE

Sequences:

>Translated_417_residues
MDAGRVVEEVYRNDWGRIVATLIGLVGDFDLAEEAAQEAFTAAVDQWSLDGVPEYPRAWIVQTARYKAIDRMRRRSRWEE
SLEARDGATLTHAIQAPEAFAGEIPDDRLRLIFTCCHPALALESQVALALRTLCGLETDEIARAFLVPQTTMAQRLVRAK
RKIRDAGIPYAVPETREMPDRIDAVLTVIYLVFNEGYAATRGGPLVRTDLSSEAIRLGRLVRSLMKPRPPAEATALLALM
LLQDARRDARLDAAGDVVVLEEQDRGRWNQAQIAEALPLVTEALRGGGGAFAVQAAIAAVHCRAARPEDTDWPQIVRLYN
VLEEMQPSPVVSLNRAVAVAMAEGPESALAIIDTLEKELDGYHLLHAARADLLRRAGRYSEAAGSYARALALVTNDSERR
YLERRAGEVKMAASGHE
>Mature_417_residues
MDAGRVVEEVYRNDWGRIVATLIGLVGDFDLAEEAAQEAFTAAVDQWSLDGVPEYPRAWIVQTARYKAIDRMRRRSRWEE
SLEARDGATLTHAIQAPEAFAGEIPDDRLRLIFTCCHPALALESQVALALRTLCGLETDEIARAFLVPQTTMAQRLVRAK
RKIRDAGIPYAVPETREMPDRIDAVLTVIYLVFNEGYAATRGGPLVRTDLSSEAIRLGRLVRSLMKPRPPAEATALLALM
LLQDARRDARLDAAGDVVVLEEQDRGRWNQAQIAEALPLVTEALRGGGGAFAVQAAIAAVHCRAARPEDTDWPQIVRLYN
VLEEMQPSPVVSLNRAVAVAMAEGPESALAIIDTLEKELDGYHLLHAARADLLRRAGRYSEAAGSYARALALVTNDSERR
YLERRAGEVKMAASGHE

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45952; Mature: 45952

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAGRVVEEVYRNDWGRIVATLIGLVGDFDLAEEAAQEAFTAAVDQWSLDGVPEYPRAWI
CCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VQTARYKAIDRMRRRSRWEESLEARDGATLTHAIQAPEAFAGEIPDDRLRLIFTCCHPAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCCHHHHHHHHHHCHHH
ALESQVALALRTLCGLETDEIARAFLVPQTTMAQRLVRAKRKIRDAGIPYAVPETREMPD
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
RIDAVLTVIYLVFNEGYAATRGGPLVRTDLSSEAIRLGRLVRSLMKPRPPAEATALLALM
HHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLQDARRDARLDAAGDVVVLEEQDRGRWNQAQIAEALPLVTEALRGGGGAFAVQAAIAAV
HHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
HCRAARPEDTDWPQIVRLYNVLEEMQPSPVVSLNRAVAVAMAEGPESALAIIDTLEKELD
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHEEEEECCCCHHHHHHHHHHHHHHC
GYHLLHAARADLLRRAGRYSEAAGSYARALALVTNDSERRYLERRAGEVKMAASGHE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCHHHHHHHHHCCCEEECCCCCC
>Mature Secondary Structure
MDAGRVVEEVYRNDWGRIVATLIGLVGDFDLAEEAAQEAFTAAVDQWSLDGVPEYPRAWI
CCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VQTARYKAIDRMRRRSRWEESLEARDGATLTHAIQAPEAFAGEIPDDRLRLIFTCCHPAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCCHHHHHHHHHHCHHH
ALESQVALALRTLCGLETDEIARAFLVPQTTMAQRLVRAKRKIRDAGIPYAVPETREMPD
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
RIDAVLTVIYLVFNEGYAATRGGPLVRTDLSSEAIRLGRLVRSLMKPRPPAEATALLALM
HHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLQDARRDARLDAAGDVVVLEEQDRGRWNQAQIAEALPLVTEALRGGGGAFAVQAAIAAV
HHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
HCRAARPEDTDWPQIVRLYNVLEEMQPSPVVSLNRAVAVAMAEGPESALAIIDTLEKELD
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHEEEEECCCCHHHHHHHHHHHHHHC
GYHLLHAARADLLRRAGRYSEAAGSYARALALVTNDSERRYLERRAGEVKMAASGHE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCHHHHHHHHHCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]