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The map label for this gene is phoD [H]

Identifier: 116624302

GI number: 116624302

Start: 6551945

End: 6553600

Strand: Direct

Name: phoD [H]

Synonym: Acid_5220

Alternate gene names: 116624302

Gene position: 6551945-6553600 (Clockwise)

Preceding gene: 116624300

Following gene: 116624303

Centisome position: 65.75

GC content: 63.35

Gene sequence:

>1656_bases
ATGACGCTCAATCGACGCGAGTTCGTTCAATTGGCGGCGGCGATGGGAGCGTCGCTGGCGTGGGGCGGATCGGCTCGAGC
GTCAACCACCGGTTGGCATGAGCGGCGCGACCTTTATCCGGAGGGCGTCGCGTCCGGCGATCCCGATCCGAGCTCTGTTA
TCCTTTGGACCCGGAGGCCGTTCGAGTCGGGCGGCCGGCGTGTGCTTACGGTGGAGGTTGCGGAGGATGATGCGTTCCGG
CGGGTCGTCGCAAAGGCGTCCGCGCCGGTCTCAGCGGAATCGGATTGGACGACGCGCGTGCTGGTCGGTCATCTCAAGCC
TGCGCGCGTCTACTGGTACCGCTTCATCGATGGAGAGGCCAACGGCAGCCGCGTAGGCCGGACGATCACCGCACCGCCGG
CGAACGATCCACGGCCGGTCAATTTCGCCTTTGTCAGCTGCCAGAGCGTTAATGAAGGCAAGCTCAACGGCTATCGCCGG
ATGATCTTTGAGGATGAGCGCGCGGCTCCCGCCGATCAACTCGGTTTCGTTCTCCACCTCGGTGATTTCATTTACGAGGT
CGTCGAATATCCCGACGAGCTGCCGACGCGGTACGACCGCACGATCTACGAAGTCTGCCGGATTCCCGATGGCGGCCAAA
CCGGCAAATTCCATTACCCGCTAACGGTCGAGGGCTACCGCGCCGTCTACAAGGGCTACCTTGCCGATCCCGACCTGCAA
GACGCGCGGGCACGTTGGCCGTTCGTCGCGATCTGGGACAATCACGAATTCTCCTGGCAGGGCCGGCAGAGCATCGTCCA
GGCAGGGGGCGCTCCGCAACCGGGCCAGACTGTGAAGGTCGCCGCCAACCAGGCGTGGTTCGAATATATTCCCGCACGCG
TGAATGCGCCGAGCGGATCGCTCGACACGTTCGGCGCGGTGGCGGTGAAAAATGTGCCGATAGAAACGTGGGACGACAGC
GGCCTCGGGATCGAACCCAACAACCTGAAGGCCATCAACAGCCTGATCGCCTACCGGTCTTTGCGCTACGGCCGGCACCT
CGATCTCATTCTCACCGACCAGCACAGCTTCTGCGGCGACGACCCGACCGATGCGGAGGGCGTCGGCAAGATTTACGATC
CGGCTTTTAACGGGATGTTCTCGGAACCGGCGATGATCGCGCTCGATGCCGGCCGCACCTTCAACGGGGGCAAACCGCCC
GCCGAACTCAGCTTTGGCGACGTAAGCATCCCTAATCCTCGAAAGGATTCACCGCCGCGCACGTTGCTCGGGACCCGTCA
GAAGAATTGGTTCATGGACCAGCTCCGCCGGTCCGCGGCAACCTGGAAGATCTGGGGCAATTCGCTCGGTGCCCTCGATT
TGCGGGCCGACCCGCAGAACCTTCCCGATGGGCTGACCAAGCAGAAGTGGCCGGCCGACACCTTCGCGCAGATCGGCAGC
GGCGATTATGGCAGCGCCTACCACGAGCGCGGCGAAATCTATGACCTCGTCCGTGATTCGAAGATCACCGGATTCGCGAT
CGTGTCGGGCGACCGTCACAGCTTTTGGGCCGGCTATGCCGCCTCCCGATTGCCACCCGCCAAATTCGAGCCGGTCGGGA
TCAGTTTCGTTGGCGCCTCGCTGGCCAGCCCTGGGGCGATGGAGGGAGGCTTATGA

Upstream 100 bases:

>100_bases
TACGAGCCGGGTACGTCCACGTCTACTATATTGTTTCAGCTCGCCGTTCATGCCCGATCACGTTGCCTGGCATGCGGAGA
GATTGCGAAGGAGAGGGACG

Downstream 100 bases:

>100_bases
GCATCGTCTTCCCAAGGATCATCCGCTCCGTTCGCTGTTCCTGGCCGACCGGCCGGCGGGTAAGCCCGAATGGACTTACA
ACATGCTCCTCAAGCACGGC

Product: alkaline phosphatase

Products: NA

Alternate protein names: APaseD [H]

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MTLNRREFVQLAAAMGASLAWGGSARASTTGWHERRDLYPEGVASGDPDPSSVILWTRRPFESGGRRVLTVEVAEDDAFR
RVVAKASAPVSAESDWTTRVLVGHLKPARVYWYRFIDGEANGSRVGRTITAPPANDPRPVNFAFVSCQSVNEGKLNGYRR
MIFEDERAAPADQLGFVLHLGDFIYEVVEYPDELPTRYDRTIYEVCRIPDGGQTGKFHYPLTVEGYRAVYKGYLADPDLQ
DARARWPFVAIWDNHEFSWQGRQSIVQAGGAPQPGQTVKVAANQAWFEYIPARVNAPSGSLDTFGAVAVKNVPIETWDDS
GLGIEPNNLKAINSLIAYRSLRYGRHLDLILTDQHSFCGDDPTDAEGVGKIYDPAFNGMFSEPAMIALDAGRTFNGGKPP
AELSFGDVSIPNPRKDSPPRTLLGTRQKNWFMDQLRRSAATWKIWGNSLGALDLRADPQNLPDGLTKQKWPADTFAQIGS
GDYGSAYHERGEIYDLVRDSKITGFAIVSGDRHSFWAGYAASRLPPAKFEPVGISFVGASLASPGAMEGGL

Sequences:

>Translated_551_residues
MTLNRREFVQLAAAMGASLAWGGSARASTTGWHERRDLYPEGVASGDPDPSSVILWTRRPFESGGRRVLTVEVAEDDAFR
RVVAKASAPVSAESDWTTRVLVGHLKPARVYWYRFIDGEANGSRVGRTITAPPANDPRPVNFAFVSCQSVNEGKLNGYRR
MIFEDERAAPADQLGFVLHLGDFIYEVVEYPDELPTRYDRTIYEVCRIPDGGQTGKFHYPLTVEGYRAVYKGYLADPDLQ
DARARWPFVAIWDNHEFSWQGRQSIVQAGGAPQPGQTVKVAANQAWFEYIPARVNAPSGSLDTFGAVAVKNVPIETWDDS
GLGIEPNNLKAINSLIAYRSLRYGRHLDLILTDQHSFCGDDPTDAEGVGKIYDPAFNGMFSEPAMIALDAGRTFNGGKPP
AELSFGDVSIPNPRKDSPPRTLLGTRQKNWFMDQLRRSAATWKIWGNSLGALDLRADPQNLPDGLTKQKWPADTFAQIGS
GDYGSAYHERGEIYDLVRDSKITGFAIVSGDRHSFWAGYAASRLPPAKFEPVGISFVGASLASPGAMEGGL
>Mature_550_residues
TLNRREFVQLAAAMGASLAWGGSARASTTGWHERRDLYPEGVASGDPDPSSVILWTRRPFESGGRRVLTVEVAEDDAFRR
VVAKASAPVSAESDWTTRVLVGHLKPARVYWYRFIDGEANGSRVGRTITAPPANDPRPVNFAFVSCQSVNEGKLNGYRRM
IFEDERAAPADQLGFVLHLGDFIYEVVEYPDELPTRYDRTIYEVCRIPDGGQTGKFHYPLTVEGYRAVYKGYLADPDLQD
ARARWPFVAIWDNHEFSWQGRQSIVQAGGAPQPGQTVKVAANQAWFEYIPARVNAPSGSLDTFGAVAVKNVPIETWDDSG
LGIEPNNLKAINSLIAYRSLRYGRHLDLILTDQHSFCGDDPTDAEGVGKIYDPAFNGMFSEPAMIALDAGRTFNGGKPPA
ELSFGDVSIPNPRKDSPPRTLLGTRQKNWFMDQLRRSAATWKIWGNSLGALDLRADPQNLPDGLTKQKWPADTFAQIGSG
DYGSAYHERGEIYDLVRDSKITGFAIVSGDRHSFWAGYAASRLPPAKFEPVGISFVGASLASPGAMEGGL

Specific function: Unknown

COG id: COG3540

COG function: function code P; Phosphodiesterase/alkaline phosphatase D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PhoD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018946
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09423 PhoD [H]

EC number: =3.1.3.1 [H]

Molecular weight: Translated: 60585; Mature: 60454

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNRREFVQLAAAMGASLAWGGSARASTTGWHERRDLYPEGVASGDPDPSSVILWTRRP
CCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCC
FESGGRRVLTVEVAEDDAFRRVVAKASAPVSAESDWTTRVLVGHLKPARVYWYRFIDGEA
CCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCC
NGSRVGRTITAPPANDPRPVNFAFVSCQSVNEGKLNGYRRMIFEDERAAPADQLGFVLHL
CCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
GDFIYEVVEYPDELPTRYDRTIYEVCRIPDGGQTGKFHYPLTVEGYRAVYKGYLADPDLQ
HHHHHHHHHCCHHCCCHHHHHHHHHHCCCCCCCCCEEEECEEEHHHHHHHHCCCCCCCCH
DARARWPFVAIWDNHEFSWQGRQSIVQAGGAPQPGQTVKVAANQAWFEYIPARVNAPSGS
HHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEEECHHHHHHCCCEECCCCCC
LDTFGAVAVKNVPIETWDDSGLGIEPNNLKAINSLIAYRSLRYGRHLDLILTDQHSFCGD
CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
DPTDAEGVGKIYDPAFNGMFSEPAMIALDAGRTFNGGKPPAELSFGDVSIPNPRKDSPPR
CCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
TLLGTRQKNWFMDQLRRSAATWKIWGNSLGALDLRADPQNLPDGLTKQKWPADTFAQIGS
HHHCCCCCHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCC
GDYGSAYHERGEIYDLVRDSKITGFAIVSGDRHSFWAGYAASRLPPAKFEPVGISFVGAS
CCCCCHHHHCCHHHHHHHCCCCCEEEEEECCCCCEECCHHHHCCCCCCCCCCCEEEECHH
LASPGAMEGGL
HCCCCCCCCCC
>Mature Secondary Structure 
TLNRREFVQLAAAMGASLAWGGSARASTTGWHERRDLYPEGVASGDPDPSSVILWTRRP
CCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCC
FESGGRRVLTVEVAEDDAFRRVVAKASAPVSAESDWTTRVLVGHLKPARVYWYRFIDGEA
CCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCC
NGSRVGRTITAPPANDPRPVNFAFVSCQSVNEGKLNGYRRMIFEDERAAPADQLGFVLHL
CCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
GDFIYEVVEYPDELPTRYDRTIYEVCRIPDGGQTGKFHYPLTVEGYRAVYKGYLADPDLQ
HHHHHHHHHCCHHCCCHHHHHHHHHHCCCCCCCCCEEEECEEEHHHHHHHHCCCCCCCCH
DARARWPFVAIWDNHEFSWQGRQSIVQAGGAPQPGQTVKVAANQAWFEYIPARVNAPSGS
HHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEEECHHHHHHCCCEECCCCCC
LDTFGAVAVKNVPIETWDDSGLGIEPNNLKAINSLIAYRSLRYGRHLDLILTDQHSFCGD
CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
DPTDAEGVGKIYDPAFNGMFSEPAMIALDAGRTFNGGKPPAELSFGDVSIPNPRKDSPPR
CCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
TLLGTRQKNWFMDQLRRSAATWKIWGNSLGALDLRADPQNLPDGLTKQKWPADTFAQIGS
HHHCCCCCHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCC
GDYGSAYHERGEIYDLVRDSKITGFAIVSGDRHSFWAGYAASRLPPAKFEPVGISFVGAS
CCCCCHHHHCCHHHHHHHCCCCCEEEEEECCCCCEECCHHHHCCCCCCCCCCCEEEECHH
LASPGAMEGGL
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760916; 9384377; 7704254; 25878 [H]