Click here to switch to the map view.

The map label for this gene is infA [H]

Identifier: 116624179

GI number: 116624179

Start: 6429605

End: 6429838

Strand: Reverse

Name: infA [H]

Synonym: Acid_5095

Alternate gene names: 116624179

Gene position: 6429838-6429605 (Counterclockwise)

Preceding gene: 116624180

Following gene: 116624178

Centisome position: 64.52

GC content: 60.26

Gene sequence:

>234_bases
GTGGGTGCTGACGAGGCCGTAGGTTCGGTAAAGGTAGCGGCCACGGTGGTGGAAGAGCGGCCGAGTGCGATCTACCTGGT
CGTGCTGGAAGGCCAGCAGAAGGTATTAGCCCACTTGGTGGGAGTTGTGAAACGGAATTTTGTCCGGTTGGTTCCGGGCG
ATAGGGTCGAGGTGGAACTGGCGCCTCACGATCCGACGCGTGGCAGGATCACGCGGAAGTTGGGAAGCGAATAG

Upstream 100 bases:

>100_bases
CGGAAGCCATGGTGTTGAAGGACAAGTGGACGGCGGTGACGAGGGATGGCTCCTACTCGGCGCATTTTGAACACTGCATC
GCGGTTACGGAGAACGGGCC

Downstream 100 bases:

>100_bases
GCCTACCGGTGAGTGAGAGCCCGGACCGGGTTTGAGGATTTTATGAAAGTGCGAGCGTCGGTTAAGAAGATTTGCGACAA
GTGCAAGGTGATCCACCGCG

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MGADEAVGSVKVAATVVEERPSAIYLVVLEGQQKVLAHLVGVVKRNFVRLVPGDRVEVELAPHDPTRGRITRKLGSE

Sequences:

>Translated_77_residues
MGADEAVGSVKVAATVVEERPSAIYLVVLEGQQKVLAHLVGVVKRNFVRLVPGDRVEVELAPHDPTRGRITRKLGSE
>Mature_76_residues
GADEAVGSVKVAATVVEERPSAIYLVVLEGQQKVLAHLVGVVKRNFVRLVPGDRVEVELAPHDPTRGRITRKLGSE

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 [H]

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368 [H]

Pfam domain/function: PF01176 eIF-1a [H]

EC number: NA

Molecular weight: Translated: 8315; Mature: 8184

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGADEAVGSVKVAATVVEERPSAIYLVVLEGQQKVLAHLVGVVKRNFVRLVPGDRVEVEL
CCCCCCCCCCHHEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCEEEECCCCEEEEEE
APHDPTRGRITRKLGSE
CCCCCCCCEEECCCCCC
>Mature Secondary Structure 
GADEAVGSVKVAATVVEERPSAIYLVVLEGQQKVLAHLVGVVKRNFVRLVPGDRVEVEL
CCCCCCCCCHHEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCEEEECCCCEEEEEE
APHDPTRGRITRKLGSE
CCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]