Click here to switch to the map view.

The map label for this gene is hoxY [H]

Identifier: 116624101

GI number: 116624101

Start: 6332347

End: 6332877

Strand: Reverse

Name: hoxY [H]

Synonym: Acid_5016

Alternate gene names: 116624101

Gene position: 6332877-6332347 (Counterclockwise)

Preceding gene: 116624102

Following gene: 116624100

Centisome position: 63.55

GC content: 62.34

Gene sequence:

>531_bases
ATGAGTAGCCATAAGATTCGCCTGGCGACCGTGTGGCTGGATGGCTGCTCCGGATGCCACATGTCGATTCTCGACACCGA
TGAGCGCCTGATCGCGATTGCACAACTCGCCGACGTGGTCTGGGGACCGCTGGTGGATGCCAAGGAGTTCCCCGAGAATG
TCGATGTGACGCTCGTCGAAGGCGCGATCAGCAGCGAGGAAGATCTGCGCCGCATTCGCCTGGTGCGATCGCGCACCAAG
ATTCTGGTCTCCCTGGGTGATTGCGCCGTCAATGGAAACGTGCCCGCGATGCGCAACCAGTTCGGGGCCAGCGCCGTGCT
CAAGCGCGCGTACCTGGAGAACGGAACCCTGGACGCGCAGATTCCGCGCCAGGTGATTCCGACGCTCCTGCCGCTCACGC
GTCCGGTCCACGAACTGGTTCCGGTGGACCTGTTCGTGCCCGGATGCCCGCCGTCTGCCGACCTGATCTTCTCGGTCCTC
AGCGAGTTGCTCGAAGGCAGAATGCCTAACCCCACCGCAAAATTCGGATAA

Upstream 100 bases:

>100_bases
GCCCCACCGGGGCGCTGTCTGAAAAGGGAAGGTCAGTGGCCGAGATGTCGAAACGCCGCCAGTTCCTGCCCTATCTGACG
TTGATGAGGGAAGGGCGGCG

Downstream 100 bases:

>100_bases
ATTATGCCCCGGCAAAAGATCGTTATCGACCCGGTCACTCGCATCGAAGGCCACTCCAAAATCACTATCCACCTGGATGA
GGAGGGGCACGTGGAAGAGG

Product: NADH ubiquinone oxidoreductase, 20 kDa subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSSHKIRLATVWLDGCSGCHMSILDTDERLIAIAQLADVVWGPLVDAKEFPENVDVTLVEGAISSEEDLRRIRLVRSRTK
ILVSLGDCAVNGNVPAMRNQFGASAVLKRAYLENGTLDAQIPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSADLIFSVL
SELLEGRMPNPTAKFG

Sequences:

>Translated_176_residues
MSSHKIRLATVWLDGCSGCHMSILDTDERLIAIAQLADVVWGPLVDAKEFPENVDVTLVEGAISSEEDLRRIRLVRSRTK
ILVSLGDCAVNGNVPAMRNQFGASAVLKRAYLENGTLDAQIPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSADLIFSVL
SELLEGRMPNPTAKFG
>Mature_175_residues
SSHKIRLATVWLDGCSGCHMSILDTDERLIAIAQLADVVWGPLVDAKEFPENVDVTLVEGAISSEEDLRRIRLVRSRTKI
LVSLGDCAVNGNVPAMRNQFGASAVLKRAYLENGTLDAQIPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSADLIFSVLS
ELLEGRMPNPTAKFG

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.1.2 [H]

Molecular weight: Translated: 19166; Mature: 19034

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHKIRLATVWLDGCSGCHMSILDTDERLIAIAQLADVVWGPLVDAKEFPENVDVTLVE
CCCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEE
GAISSEEDLRRIRLVRSRTKILVSLGDCAVNGNVPAMRNQFGASAVLKRAYLENGTLDAQ
CCCCCHHHHHHHHHHHHHHHEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
IPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSADLIFSVLSELLEGRMPNPTAKFG
CCHHHHHHHHHCCCCHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SSHKIRLATVWLDGCSGCHMSILDTDERLIAIAQLADVVWGPLVDAKEFPENVDVTLVE
CCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEE
GAISSEEDLRRIRLVRSRTKILVSLGDCAVNGNVPAMRNQFGASAVLKRAYLENGTLDAQ
CCCCCHHHHHHHHHHHHHHHEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
IPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSADLIFSVLSELLEGRMPNPTAKFG
CCHHHHHHHHHCCCCHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982 [H]