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The map label for this gene is ymdB [C]

Identifier: 116624047

GI number: 116624047

Start: 6264682

End: 6265218

Strand: Reverse

Name: ymdB [C]

Synonym: Acid_4961

Alternate gene names: 116624047

Gene position: 6265218-6264682 (Counterclockwise)

Preceding gene: 116624054

Following gene: 116624044

Centisome position: 62.87

GC content: 67.04

Gene sequence:

>537_bases
ATGGAGTGGACGAGCAGCACCGGTAAGAAGATCGTCCTCATCAGGGGCGACATCACGCGTATCGCCGTGGACGTCATGGC
GAATGCCGCGAATAGCGCGCTCGCGGGCGGCGGCGGTGTCGATGGCGCGATTCACCGCGCCGGCGGCCCCGCGATCATGC
GCGAGCTCGATGCCATCCGCGCGCGCAGCGGAGGGTGCCCCACCGGCAGCGCCGTCGCCACCAGTGCCGGCAGTCTACCC
GCCCGGTACGTCTTCCACGCCGTCGGCCCGGTCTGGCGCGGCGGGGGCTGCGGCGAACCGGAACTCCTCGCCGCTTGCTA
TCGTACCTGCCTCGATCTCGCCCGCGAGCGCAAGCTTCGCACCATCAGCTTCCCCGCAATCAGTACCGGAATCTACGGCT
ATCCCTTACAGGCCGCCGCGGCTATCGCCATCCGCGAAGTCCAGTCCCATCTGGAAGACCCCACCACGTCCATCGAGCAA
GTGATCTTCGTCCTCTTCGACCCGCACGCCGAAAACATTTACGCCGACCTGCTGTGA

Upstream 100 bases:

>100_bases
CGATGCGGGTCTTCGCCATGAGCCTCGTTGCGGACGCCGCACACGCCGCCCCAACCGCCAGTAATTCGCGCCTTGTCATG
AAATGATTGTAATAGAAGAT

Downstream 100 bases:

>100_bases
CGAGCCTTGATTATTGTTGCGGCTCGCCGCCCTGTATGACACTGCTCTTATTTGCTCGCAGCCCGCAAACATCCGCACCG
GAATATTCGCGTACGTGTAA

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MEWTSSTGKKIVLIRGDITRIAVDVMANAANSALAGGGGVDGAIHRAGGPAIMRELDAIRARSGGCPTGSAVATSAGSLP
ARYVFHAVGPVWRGGGCGEPELLAACYRTCLDLARERKLRTISFPAISTGIYGYPLQAAAAIAIREVQSHLEDPTTSIEQ
VIFVLFDPHAENIYADLL

Sequences:

>Translated_178_residues
MEWTSSTGKKIVLIRGDITRIAVDVMANAANSALAGGGGVDGAIHRAGGPAIMRELDAIRARSGGCPTGSAVATSAGSLP
ARYVFHAVGPVWRGGGCGEPELLAACYRTCLDLARERKLRTISFPAISTGIYGYPLQAAAAIAIREVQSHLEDPTTSIEQ
VIFVLFDPHAENIYADLL
>Mature_178_residues
MEWTSSTGKKIVLIRGDITRIAVDVMANAANSALAGGGGVDGAIHRAGGPAIMRELDAIRARSGGCPTGSAVATSAGSLP
ARYVFHAVGPVWRGGGCGEPELLAACYRTCLDLARERKLRTISFPAISTGIYGYPLQAAAAIAIREVQSHLEDPTTSIEQ
VIFVLFDPHAENIYADLL

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=163, Percent_Identity=45.398773006135, Blast_Score=146, Evalue=8e-36,
Organism=Homo sapiens, GI13569840, Length=176, Percent_Identity=43.1818181818182, Blast_Score=142, Evalue=1e-34,
Organism=Homo sapiens, GI20336746, Length=168, Percent_Identity=32.1428571428571, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI207450721, Length=177, Percent_Identity=32.2033898305085, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI8923143, Length=177, Percent_Identity=32.2033898305085, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI93141018, Length=171, Percent_Identity=30.9941520467836, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI93141020, Length=171, Percent_Identity=30.9941520467836, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI4758496, Length=171, Percent_Identity=30.9941520467836, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI154813199, Length=150, Percent_Identity=34.6666666666667, Blast_Score=97, Evalue=7e-21,
Organism=Homo sapiens, GI8923920, Length=171, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=32.6241134751773, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371716, Length=141, Percent_Identity=32.6241134751773, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371714, Length=141, Percent_Identity=32.6241134751773, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371712, Length=141, Percent_Identity=32.6241134751773, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=32.6241134751773, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=32.6241134751773, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI165377137, Length=177, Percent_Identity=29.3785310734463, Blast_Score=74, Evalue=9e-14,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=50.2958579881657, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=173, Percent_Identity=42.1965317919075, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586353, Length=150, Percent_Identity=30, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18650; Mature: 18650

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWTSSTGKKIVLIRGDITRIAVDVMANAANSALAGGGGVDGAIHRAGGPAIMRELDAIR
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHHHH
ARSGGCPTGSAVATSAGSLPARYVFHAVGPVWRGGGCGEPELLAACYRTCLDLARERKLR
HCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
TISFPAISTGIYGYPLQAAAAIAIREVQSHLEDPTTSIEQVIFVLFDPHAENIYADLL
EEECCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHEEHEEECCCCHHHHHHCC
>Mature Secondary Structure
MEWTSSTGKKIVLIRGDITRIAVDVMANAANSALAGGGGVDGAIHRAGGPAIMRELDAIR
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHHHH
ARSGGCPTGSAVATSAGSLPARYVFHAVGPVWRGGGCGEPELLAACYRTCLDLARERKLR
HCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
TISFPAISTGIYGYPLQAAAAIAIREVQSHLEDPTTSIEQVIFVLFDPHAENIYADLL
EEECCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHEEHEEECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]