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The map label for this gene is xerD [C]

Identifier: 116623840

GI number: 116623840

Start: 6011681

End: 6012574

Strand: Reverse

Name: xerD [C]

Synonym: Acid_4752

Alternate gene names: 116623840

Gene position: 6012574-6011681 (Counterclockwise)

Preceding gene: 116623841

Following gene: 116623839

Centisome position: 60.33

GC content: 58.39

Gene sequence:

>894_bases
GTGACCCGTCTCAGAAAAATGATGCTGGAGGAACTCCAGCGTCGTAACTATGCCCAGAGTACCGTAAAAGGCTACCTGCG
AATTGTGCAGGACTTCGCCGAGCACTTCCACCAACAGCCCGACAAACTCGGACCCGAACATCTACGCCAGTACCAGGCGC
ACCTTTTTCGGGACAAGCATCTCAATGCGGGCACCGTACAGCAGTACGTGGCCGCTCTCCGTTTCTTCTTCAACAAAACT
TTGAAGCGGCACTACTTGCTGGATGACATTCCGATGCCCAAGCGGCATCGGAAGCTGCCGGAGATCCTGAGCCCGGATGA
GGTCGCTCTACTGATCGGCTCGGCCAGTAATCTGTTGCACCAGACCATGCTCATGACGCTGTACTCCACTGGCGTGCGCC
GTGCCGAGTTGTGCCGGTTGAAATCCGCTGACATCGATAGCCAGCGCATGATGGTGCACATCCGTCAGGGCAAGGGCGGT
CACGACCGCGATGTGCCCTTGAGCCCCAGGTTGCTGGAGACACTGCGTGTCTACTGGCGGTGGATGAAGCCCAAAACCTA
TCTGTTTCCCGGCACCGTGAATAACTGGCGAGCCGATGTCCCCATTACCACAAAAGTGCCGTGGGAAGCCTGCCGGCAAG
CCGCCCAAAGAGCCGGCATCACCAAGCACGTCTCCCCGCACACCTTGAGGCACTGCTTCGCCAGTCACCTGCTCGAAGCC
GGAACCGATCTGCGCACGATCCAGATGTTGCTGGGCCATGCCAAACTCGAACACACCGCGATGTACCTGCATCTCTCGCG
GAAGCATCTCACCGCCGTGGCCAACCCGCTGGATGCGATCGTTGTGTCCAGCCCGGACAACATCAAGCGCTTCCGGAAGA
AGCAGAAGCAATGA

Upstream 100 bases:

>100_bases
CGTTTGAACAAAGCCGCTGGCGCGGCGGACGCTACGCGTGGTGGTGTGGGTAGAGTTCGGGCTTCGGCGGGCGTATTTTG
TGGGTCACAAGGAGGTCCCT

Downstream 100 bases:

>100_bases
ACCGGCCACCCTTCGAGGTGGCCGATATCATCCGACAATACGGCAACAGCTTCATCCGAAAGCACCGGTCCTGGTTGACG
TGGCTTCATCTCCGCGTCCT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAALRFFFNKT
LKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG
HDRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEA
GTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAVANPLDAIVVSSPDNIKRFRKKQKQ

Sequences:

>Translated_297_residues
MTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAALRFFFNKT
LKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG
HDRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEA
GTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAVANPLDAIVVSSPDNIKRFRKKQKQ
>Mature_296_residues
TRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAALRFFFNKTL
KRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGH
DRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAG
TDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAVANPLDAIVVSSPDNIKRFRKKQKQ

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=279, Percent_Identity=32.258064516129, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790244, Length=235, Percent_Identity=30.2127659574468, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790767, Length=177, Percent_Identity=26.5536723163842, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34625; Mature: 34494

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
LNAGTVQQYVAALRFFFNKTLKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCEEEEECCHHHHHH
QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWR
HHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEA
HCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
GTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAVANPLDAIVVSSPDNIKRFRKKQKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure 
TRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
LNAGTVQQYVAALRFFFNKTLKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCEEEEECCHHHHHH
QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWR
HHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEA
HCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
GTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAVANPLDAIVVSSPDNIKRFRKKQKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]