Click here to switch to the map view.

The map label for this gene is 116623834

Identifier: 116623834

GI number: 116623834

Start: 6004158

End: 6005477

Strand: Reverse

Name: 116623834

Synonym: Acid_4746

Alternate gene names: NA

Gene position: 6005477-6004158 (Counterclockwise)

Preceding gene: 116623839

Following gene: 116623832

Centisome position: 60.26

GC content: 59.02

Gene sequence:

>1320_bases
GTGGCTGCGAAAACTTCGGCGCCAGCACCACAAGAAAAGCGTTTCACGGCATATATAGACTGGCTGGCGCAAGCCGTGGG
ACATGCGGACCGCAACATCCCTCTGCGGAATTACTGTACCGGACTGTTGCTGGACGGCGAACGCAAGAGTGTCGAGCCAA
TGGCAGCTCGGCTAGCTCCCGATCACGTGCAAGGCATGCACGAGTCGCTGCACCACTTCGTGGCCAAGTCGCCCTGGAGC
GACTTCGACATGTTGAGGCAAGTGCGGAATTACGTCCTGCCAGCGATGGAGAAGAAGTGCCCTGTGACCGCGTGGATTGT
GGATGAAACCAGCTACGTCAAGAAGGGTACTCATTCGGTAGGAGTCGCACGACAATATTGTGGTCGCTTGGGAAAGAAGG
AAAACTGTCAGGTGGCGGTCAGTCTATCGGTAGCCACCGCGACCGGCAGTCTGCCGATTGCGTGGCAACTCTACCTGACG
GAAGATTGGGCGTCCGACCAGGAGCGCCGCAGGCAAACCGGAGTTCCCCCAGAGATATCGTTTCAAACCAAGCCGCAGAT
TGCTCTGGCGCAGATTCAGCGGGCAGTCGCAGAAAAGGTGCCCCTGGGTGTGTTGCTGGCGGACGAAATATACGGATCCA
ATCGCGAGTTTCGGGACGGTGTGGCGGAACTGAAACTGGAGTATTCGCTGGCGGTGAGGTCCAACACAACGGTGTGGGCA
TTGGATCGGCAGCCTTTGCCACCGAAGCCTTGGAACGGCAAGGGCCGGCAGGCCCAACGAATGCGACGGGATCCGGCACA
CCAACCGATTACGGTGAAACAGTTGGCGCAGGAGTTGCCGCAGCAAATCTGGAGTGAAGTCGCCTGGCGCGAAGGGAGCA
AGGGAACCTTGCAGTCCCGCTTTGCCGCGTTACGGGTTCGACCAGCGTACGGAGACGATCGCAAAGGGAGCCTGCGGCCG
GAAGAGTGGTTGCTGATCGAGTGGCCGAAAGGGAGCGACGAGCCGAGCGCATATTGGTTATCGAACTTACCCGAGAAAAC
CCGGCTGAAGGATCTGGTGGGGACCAGCAACCATCGATGGGTGATTGAGCGCGACTATGAAGAGCTCAAATCAGAACTTG
GTCTGGCACATTACGAAGGCCGCAACTGGCGGGGATTTCATCACCACGCCACTCTCTGCATCGCGGCTTACGGCTTCTTG
ATTGCGGAAAGGAGCCGTTTTTCCCCCTCAGCCTACGTCGGCCATCTTGGGCTACGCGCCCGACCACTACCTCCCCAGTT
CCGACCGCGGGGGGCGAAGGACGAGGGCCGAACGGCATAA

Upstream 100 bases:

>100_bases
GATCATACGGCCGGGACTTTGTTTCCGTTGTAAATCCTGGAAACACCGTGTGCTTAATTCTACTGTGTCATAAAAAACAT
ATTTAGTCTATAATGTTTTC

Downstream 100 bases:

>100_bases
CCCGAATTCGATCGCAACCCTCCGCATCCAGATCGCCCGATTCCTTATCCAGCAACTTCGGTGCTGTCCGGTATGTTGTC
AGTTGCGCGTGTAATTTATG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MAAKTSAPAPQEKRFTAYIDWLAQAVGHADRNIPLRNYCTGLLLDGERKSVEPMAARLAPDHVQGMHESLHHFVAKSPWS
DFDMLRQVRNYVLPAMEKKCPVTAWIVDETSYVKKGTHSVGVARQYCGRLGKKENCQVAVSLSVATATGSLPIAWQLYLT
EDWASDQERRRQTGVPPEISFQTKPQIALAQIQRAVAEKVPLGVLLADEIYGSNREFRDGVAELKLEYSLAVRSNTTVWA
LDRQPLPPKPWNGKGRQAQRMRRDPAHQPITVKQLAQELPQQIWSEVAWREGSKGTLQSRFAALRVRPAYGDDRKGSLRP
EEWLLIEWPKGSDEPSAYWLSNLPEKTRLKDLVGTSNHRWVIERDYEELKSELGLAHYEGRNWRGFHHHATLCIAAYGFL
IAERSRFSPSAYVGHLGLRARPLPPQFRPRGAKDEGRTA

Sequences:

>Translated_439_residues
MAAKTSAPAPQEKRFTAYIDWLAQAVGHADRNIPLRNYCTGLLLDGERKSVEPMAARLAPDHVQGMHESLHHFVAKSPWS
DFDMLRQVRNYVLPAMEKKCPVTAWIVDETSYVKKGTHSVGVARQYCGRLGKKENCQVAVSLSVATATGSLPIAWQLYLT
EDWASDQERRRQTGVPPEISFQTKPQIALAQIQRAVAEKVPLGVLLADEIYGSNREFRDGVAELKLEYSLAVRSNTTVWA
LDRQPLPPKPWNGKGRQAQRMRRDPAHQPITVKQLAQELPQQIWSEVAWREGSKGTLQSRFAALRVRPAYGDDRKGSLRP
EEWLLIEWPKGSDEPSAYWLSNLPEKTRLKDLVGTSNHRWVIERDYEELKSELGLAHYEGRNWRGFHHHATLCIAAYGFL
IAERSRFSPSAYVGHLGLRARPLPPQFRPRGAKDEGRTA
>Mature_438_residues
AAKTSAPAPQEKRFTAYIDWLAQAVGHADRNIPLRNYCTGLLLDGERKSVEPMAARLAPDHVQGMHESLHHFVAKSPWSD
FDMLRQVRNYVLPAMEKKCPVTAWIVDETSYVKKGTHSVGVARQYCGRLGKKENCQVAVSLSVATATGSLPIAWQLYLTE
DWASDQERRRQTGVPPEISFQTKPQIALAQIQRAVAEKVPLGVLLADEIYGSNREFRDGVAELKLEYSLAVRSNTTVWAL
DRQPLPPKPWNGKGRQAQRMRRDPAHQPITVKQLAQELPQQIWSEVAWREGSKGTLQSRFAALRVRPAYGDDRKGSLRPE
EWLLIEWPKGSDEPSAYWLSNLPEKTRLKDLVGTSNHRWVIERDYEELKSELGLAHYEGRNWRGFHHHATLCIAAYGFLI
AERSRFSPSAYVGHLGLRARPLPPQFRPRGAKDEGRTA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG5659

COG function: function code L; FOG: Transposase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49707; Mature: 49576

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKTSAPAPQEKRFTAYIDWLAQAVGHADRNIPLRNYCTGLLLDGERKSVEPMAARLAP
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEECCCCCCCCHHHHHCCH
DHVQGMHESLHHFVAKSPWSDFDMLRQVRNYVLPAMEKKCPVTAWIVDETSYVKKGTHSV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHH
GVARQYCGRLGKKENCQVAVSLSVATATGSLPIAWQLYLTEDWASDQERRRQTGVPPEIS
HHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCC
FQTKPQIALAQIQRAVAEKVPLGVLLADEIYGSNREFRDGVAELKLEYSLAVRSNTTVWA
CCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCHHHCCHHHEEEEEEEEEECCCEEEE
LDRQPLPPKPWNGKGRQAQRMRRDPAHQPITVKQLAQELPQQIWSEVAWREGSKGTLQSR
ECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAALRVRPAYGDDRKGSLRPEEWLLIEWPKGSDEPSAYWLSNLPEKTRLKDLVGTSNHRW
HHHEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCE
VIERDYEELKSELGLAHYEGRNWRGFHHHATLCIAAYGFLIAERSRFSPSAYVGHLGLRA
EEECCHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
RPLPPQFRPRGAKDEGRTA
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAKTSAPAPQEKRFTAYIDWLAQAVGHADRNIPLRNYCTGLLLDGERKSVEPMAARLAP
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEECCCCCCCCHHHHHCCH
DHVQGMHESLHHFVAKSPWSDFDMLRQVRNYVLPAMEKKCPVTAWIVDETSYVKKGTHSV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHH
GVARQYCGRLGKKENCQVAVSLSVATATGSLPIAWQLYLTEDWASDQERRRQTGVPPEIS
HHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCC
FQTKPQIALAQIQRAVAEKVPLGVLLADEIYGSNREFRDGVAELKLEYSLAVRSNTTVWA
CCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCHHHCCHHHEEEEEEEEEECCCEEEE
LDRQPLPPKPWNGKGRQAQRMRRDPAHQPITVKQLAQELPQQIWSEVAWREGSKGTLQSR
ECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAALRVRPAYGDDRKGSLRPEEWLLIEWPKGSDEPSAYWLSNLPEKTRLKDLVGTSNHRW
HHHEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCE
VIERDYEELKSELGLAHYEGRNWRGFHHHATLCIAAYGFLIAERSRFSPSAYVGHLGLRA
EEECCHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
RPLPPQFRPRGAKDEGRTA
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1662761 [H]