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The map label for this gene is ydgJ [C]

Identifier: 116623799

GI number: 116623799

Start: 5963208

End: 5964524

Strand: Reverse

Name: ydgJ [C]

Synonym: Acid_4711

Alternate gene names: 116623799

Gene position: 5964524-5963208 (Counterclockwise)

Preceding gene: 116623800

Following gene: 116623798

Centisome position: 59.85

GC content: 60.29

Gene sequence:

>1317_bases
ATGGATCGACGAAATTTCTTCATCAGCACGGCGGCCGCGGCAGCCGCCTCCACCACCGTTTTTGGCAGCCCGAGCGACAC
CCTTCGGGTTGCGACTATCGGCCTTCGCGGCCGCGGAAAAGACCACATCAAAGAGATCACCGGACAGCCAAACGTCGAAC
TGGTCGCGCTCTGCGACATCGACCAGAAGGTGCTCGACGCGGCGGTCAAATCGGTCGAGGAAAAGACTCAGAAGAAGCCT
CAGGCCTATACCGATTACCGGAAGCTCCTGGAAGATAAGTCGATCGACGCAATCTCGATCGCGACTCCGAATCACTGGCA
CACGCTGATGACCATCGACGCGTGCCGCGCCGGCAAAGACGTCTACGTCGAAAAGCCGTGCTCGCACAATATTTTCGAGG
CCAAACAGATCGTCGCGGCGGCGCGCAAGTACAACCGCATGGTGCAGCAGGGCAGCCAGAGCCGCTCGTCGGTCGCGCTG
CGCGACGGTGTACAGAAACTGCGCGAAGGCGTGATCGGCGATCTCTACCTTTCGCGCGGGCTCTGCTTCAAGTGGCGCGA
CACCATTGGAACGGCTGCGGTCAGCGATCCGCCATCGTGGGTGGATTACGACCTGTGGCAAGGGCCGGCGCAGAAGGTTC
CGTTCAAGGCCAATCGCTTCCACTACAACTGGCACTGGTATTGGGCATACGGCAACGGCGACCTCGGCAACCAGGGCATC
CACGAGGTCGATATCGCGCGCTGGGCGCTGGGTGTCAAGTATCCGACCAAAGTCAGTGCGATCGGCGGCAAGTTCATGTT
CGAGGACGACCAGGAGACGCCGAACACGCTGAACTGCGCCTTCGAATTCAACGAGAACGGCAAGAAGCAGATGATGGAGT
TCGAGGTTCGCCACTGGATGACGAACCACGAAGCCGGCATCAATGCGAAGCCGCCGGCGGAGGGCAAGAAGCCGGATTCC
AACACCATCGGCAACATCCTCTACGGCTCCAAAGGCTATATGGCGATCGATGGCTACACGAAGTACCAGACCTTCCTCGG
TAAGGAAGCGGAGCCGGGCCCGAGCATGAGCAAGGGCGGCAGCCACTTCGCCAACTTCTTCGAGGCCGTACGCAATCGCA
AGAAGGAAACGCTGACCGCGGAGATCGAAGAGGGCGCCGCATCCACCGTACTGGTGCACCTTGCTAATATCTCCTACCGC
GTCGGCCGCACCGTCAACTTCGACCCCAAGACGCTGACCATCACCGGCGACGCCGGGGCAGCCAAGATGATGACGCGCGA
TTACCGTAAGCCCTTCGTAGTCCCCGAGAAGGTCTAA

Upstream 100 bases:

>100_bases
GCGCGGCTGATGGATCTGGCCATGAGTAACATTTCAGGTTATTTAAGCGGAAATCCCCTGAATGTGATAAAGTAACGGTC
GGTAGCGCTAAAGGTAACGT

Downstream 100 bases:

>100_bases
AGAAATATTTCGCGCAAAGGCGCAAAGAACGCAAAGAAGAACCGAGCGGAGAGCCCCAAAAAGGGGCCCGGCATTCGGTG
AACGCTGTGCGGCTTTGCGC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MDRRNFFISTAAAAAASTTVFGSPSDTLRVATIGLRGRGKDHIKEITGQPNVELVALCDIDQKVLDAAVKSVEEKTQKKP
QAYTDYRKLLEDKSIDAISIATPNHWHTLMTIDACRAGKDVYVEKPCSHNIFEAKQIVAAARKYNRMVQQGSQSRSSVAL
RDGVQKLREGVIGDLYLSRGLCFKWRDTIGTAAVSDPPSWVDYDLWQGPAQKVPFKANRFHYNWHWYWAYGNGDLGNQGI
HEVDIARWALGVKYPTKVSAIGGKFMFEDDQETPNTLNCAFEFNENGKKQMMEFEVRHWMTNHEAGINAKPPAEGKKPDS
NTIGNILYGSKGYMAIDGYTKYQTFLGKEAEPGPSMSKGGSHFANFFEAVRNRKKETLTAEIEEGAASTVLVHLANISYR
VGRTVNFDPKTLTITGDAGAAKMMTRDYRKPFVVPEKV

Sequences:

>Translated_438_residues
MDRRNFFISTAAAAAASTTVFGSPSDTLRVATIGLRGRGKDHIKEITGQPNVELVALCDIDQKVLDAAVKSVEEKTQKKP
QAYTDYRKLLEDKSIDAISIATPNHWHTLMTIDACRAGKDVYVEKPCSHNIFEAKQIVAAARKYNRMVQQGSQSRSSVAL
RDGVQKLREGVIGDLYLSRGLCFKWRDTIGTAAVSDPPSWVDYDLWQGPAQKVPFKANRFHYNWHWYWAYGNGDLGNQGI
HEVDIARWALGVKYPTKVSAIGGKFMFEDDQETPNTLNCAFEFNENGKKQMMEFEVRHWMTNHEAGINAKPPAEGKKPDS
NTIGNILYGSKGYMAIDGYTKYQTFLGKEAEPGPSMSKGGSHFANFFEAVRNRKKETLTAEIEEGAASTVLVHLANISYR
VGRTVNFDPKTLTITGDAGAAKMMTRDYRKPFVVPEKV
>Mature_438_residues
MDRRNFFISTAAAAAASTTVFGSPSDTLRVATIGLRGRGKDHIKEITGQPNVELVALCDIDQKVLDAAVKSVEEKTQKKP
QAYTDYRKLLEDKSIDAISIATPNHWHTLMTIDACRAGKDVYVEKPCSHNIFEAKQIVAAARKYNRMVQQGSQSRSSVAL
RDGVQKLREGVIGDLYLSRGLCFKWRDTIGTAAVSDPPSWVDYDLWQGPAQKVPFKANRFHYNWHWYWAYGNGDLGNQGI
HEVDIARWALGVKYPTKVSAIGGKFMFEDDQETPNTLNCAFEFNENGKKQMMEFEVRHWMTNHEAGINAKPPAEGKKPDS
NTIGNILYGSKGYMAIDGYTKYQTFLGKEAEPGPSMSKGGSHFANFFEAVRNRKKETLTAEIEEGAASTVLVHLANISYR
VGRTVNFDPKTLTITGDAGAAKMMTRDYRKPFVVPEKV

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 48851; Mature: 48851

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRNFFISTAAAAAASTTVFGSPSDTLRVATIGLRGRGKDHIKEITGQPNVELVALCDI
CCCCEEEEEHHHHHHHCEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEECC
DQKVLDAAVKSVEEKTQKKPQAYTDYRKLLEDKSIDAISIATPNHWHTLMTIDACRAGKD
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEHHCCCCC
VYVEKPCSHNIFEAKQIVAAARKYNRMVQQGSQSRSSVALRDGVQKLREGVIGDLYLSRG
EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCC
LCFKWRDTIGTAAVSDPPSWVDYDLWQGPAQKVPFKANRFHYNWHWYWAYGNGDLGNQGI
CEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCC
HEVDIARWALGVKYPTKVSAIGGKFMFEDDQETPNTLNCAFEFNENGKKQMMEFEVRHWM
CHHHHHHHHHCCCCCCEEHCCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
TNHEAGINAKPPAEGKKPDSNTIGNILYGSKGYMAIDGYTKYQTFLGKEAEPGPSMSKGG
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCHHHHHHHCCCCCCCCCCCCCH
SHFANFFEAVRNRKKETLTAEIEEGAASTVLVHLANISYRVGRTVNFDPKTLTITGDAGA
HHHHHHHHHHHCCCHHHEEHHHHCCCHHEEEEEEECCEEECCCEEECCCCEEEEECCCCH
AKMMTRDYRKPFVVPEKV
HHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDRRNFFISTAAAAAASTTVFGSPSDTLRVATIGLRGRGKDHIKEITGQPNVELVALCDI
CCCCEEEEEHHHHHHHCEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEECC
DQKVLDAAVKSVEEKTQKKPQAYTDYRKLLEDKSIDAISIATPNHWHTLMTIDACRAGKD
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEHHCCCCC
VYVEKPCSHNIFEAKQIVAAARKYNRMVQQGSQSRSSVALRDGVQKLREGVIGDLYLSRG
EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCC
LCFKWRDTIGTAAVSDPPSWVDYDLWQGPAQKVPFKANRFHYNWHWYWAYGNGDLGNQGI
CEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCC
HEVDIARWALGVKYPTKVSAIGGKFMFEDDQETPNTLNCAFEFNENGKKQMMEFEVRHWM
CHHHHHHHHHCCCCCCEEHCCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
TNHEAGINAKPPAEGKKPDSNTIGNILYGSKGYMAIDGYTKYQTFLGKEAEPGPSMSKGG
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCHHHHHHHCCCCCCCCCCCCCH
SHFANFFEAVRNRKKETLTAEIEEGAASTVLVHLANISYRVGRTVNFDPKTLTITGDAGA
HHHHHHHHHHHCCCHHHEEHHHHCCCHHEEEEEEECCEEECCCEEECCCCEEEEECCCCH
AKMMTRDYRKPFVVPEKV
HHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA