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The map label for this gene is ycjS [C]

Identifier: 116623541

GI number: 116623541

Start: 5637457

End: 5638647

Strand: Reverse

Name: ycjS [C]

Synonym: Acid_4451

Alternate gene names: 116623541

Gene position: 5638647-5637457 (Counterclockwise)

Preceding gene: 116623545

Following gene: 116623540

Centisome position: 56.58

GC content: 62.64

Gene sequence:

>1191_bases
ATGCCAATAGGCCGTAGAAGTTTCCTGCTTGCGGGCGCAGGCGCGCTCGCCGCACACGCCTTGCCGCCATCGGATCAGGT
TGTGCTGGGCGTCATCGGCTCCGGCAGCCGCGGCACCTTCGTCATGGGCGTCTTCCAGAAAGATCCCGCGCTCCGCGTCG
GTGCCATCTGCGACGTGTACGAGCCTAATCTGGAGAACGCGATCTCGGTCGCGTCCAAGGTTTCCGGCAACCATCCCAAG
GTTTACCGGAATTACAAGGAACTGCTCGCCGACAAGGATGTGGAGGCTGTCCTGATCGCGACGCCCGAGCATTGGCACTA
TCAGATGGTGCTCGACGCGCTCGCGGCCGGCAAAGACGTGTATGTGGAAAAGCCTCTCTGCCAGACGCCGGAGCAGGGTA
TCGCGCTGGTCGAAGCCGAGAAGAAGACCAAACAGATTATCCAGGTGGGCATGCAGCGCCGGAGTTACGACCTCTATAAG
GAGGGCCGCGCGGTAGTTGCGTCCGGCAAACTCGGCAGCGTGCGCATGGTGCGTTCGTGGTGGCTGAACAACTACGTGAA
CTCGGCGCGCGCCACCAAACTCGCGGGTCCGCTCGATTGGGAACAATGGCAGGGCTCCGCCCCGCGCCGGCCGCTCGATG
CGGACCGGTTCCGCAACTGGCGCTACTACGCGGATTACGCGGGCGGAATTGTGGCCGACCAGGGGGCGCACGTTTTCGAT
GGCATACACATGCTGATGGGCGCGACGTTCCCGAGCGCCGTCACGGCCGCCGCCAACAGTCCCCACAAGGCCGGCGTCGA
TCAGCCCGAATCCGTGGTCGCGATCGCGGAATACCCCGAGGATTTCATTGGCGTCTTCACCGTAAATTACGCTGCGATGC
AGTACAAGAGCCGGAACGATCAGCTCAATCAGCTCGATGGCGACCAGGCCCGCATGGATATCGGCCGCGAAGACCTGAGA
GTTTTTCTCAAAGGCGCGGAGGAGACACCGGCGATCGAGAAGAAGTCGGAGAAGGGGTTCGGTTGGGCCACCGATCTGCA
CGTGCAGAATTTCCTGGAGTGCGTCCGTAGCCGCAACACGCCCGCCGCGCCGATGAAGCTGGCCTTCCAGGCCGCGCTCG
TCGTGCAGATGGCGAACCTCTCCCTTAAGGGTGGTCGCCGCATGCGGTGGAATGGCACGCGAGTTATTTGA

Upstream 100 bases:

>100_bases
GCCGGGCCGCTGAAGAGCAGCGCTCCGCCCGCCAGAATCGCGCGTCTCGAAATCTTCATGGATGTTCCCTCTTTAGCGCT
CACGGACTTATCATAACCTT

Downstream 100 bases:

>100_bases
CGTTGGGGGGCGTACGTGTGTCGCCGCGGAAGCCGACTGAAAGGTCGAAAACCCCACGTGGAGCGAGGGAATACTTCTCG
AAAAAGTGCCGCGTAGCTGA

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MPIGRRSFLLAGAGALAAHALPPSDQVVLGVIGSGSRGTFVMGVFQKDPALRVGAICDVYEPNLENAISVASKVSGNHPK
VYRNYKELLADKDVEAVLIATPEHWHYQMVLDALAAGKDVYVEKPLCQTPEQGIALVEAEKKTKQIIQVGMQRRSYDLYK
EGRAVVASGKLGSVRMVRSWWLNNYVNSARATKLAGPLDWEQWQGSAPRRPLDADRFRNWRYYADYAGGIVADQGAHVFD
GIHMLMGATFPSAVTAAANSPHKAGVDQPESVVAIAEYPEDFIGVFTVNYAAMQYKSRNDQLNQLDGDQARMDIGREDLR
VFLKGAEETPAIEKKSEKGFGWATDLHVQNFLECVRSRNTPAAPMKLAFQAALVVQMANLSLKGGRRMRWNGTRVI

Sequences:

>Translated_396_residues
MPIGRRSFLLAGAGALAAHALPPSDQVVLGVIGSGSRGTFVMGVFQKDPALRVGAICDVYEPNLENAISVASKVSGNHPK
VYRNYKELLADKDVEAVLIATPEHWHYQMVLDALAAGKDVYVEKPLCQTPEQGIALVEAEKKTKQIIQVGMQRRSYDLYK
EGRAVVASGKLGSVRMVRSWWLNNYVNSARATKLAGPLDWEQWQGSAPRRPLDADRFRNWRYYADYAGGIVADQGAHVFD
GIHMLMGATFPSAVTAAANSPHKAGVDQPESVVAIAEYPEDFIGVFTVNYAAMQYKSRNDQLNQLDGDQARMDIGREDLR
VFLKGAEETPAIEKKSEKGFGWATDLHVQNFLECVRSRNTPAAPMKLAFQAALVVQMANLSLKGGRRMRWNGTRVI
>Mature_395_residues
PIGRRSFLLAGAGALAAHALPPSDQVVLGVIGSGSRGTFVMGVFQKDPALRVGAICDVYEPNLENAISVASKVSGNHPKV
YRNYKELLADKDVEAVLIATPEHWHYQMVLDALAAGKDVYVEKPLCQTPEQGIALVEAEKKTKQIIQVGMQRRSYDLYKE
GRAVVASGKLGSVRMVRSWWLNNYVNSARATKLAGPLDWEQWQGSAPRRPLDADRFRNWRYYADYAGGIVADQGAHVFDG
IHMLMGATFPSAVTAAANSPHKAGVDQPESVVAIAEYPEDFIGVFTVNYAAMQYKSRNDQLNQLDGDQARMDIGREDLRV
FLKGAEETPAIEKKSEKGFGWATDLHVQNFLECVRSRNTPAAPMKLAFQAALVVQMANLSLKGGRRMRWNGTRVI

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 43606; Mature: 43475

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIGRRSFLLAGAGALAAHALPPSDQVVLGVIGSGSRGTFVMGVFQKDPALRVGAICDVY
CCCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCEECCC
EPNLENAISVASKVSGNHPKVYRNYKELLADKDVEAVLIATPEHWHYQMVLDALAAGKDV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCE
YVEKPLCQTPEQGIALVEAEKKTKQIIQVGMQRRSYDLYKEGRAVVASGKLGSVRMVRSW
EECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCCCHHHHHHH
WLNNYVNSARATKLAGPLDWEQWQGSAPRRPLDADRFRNWRYYADYAGGIVADQGAHVFD
HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCEEEEECCCCEEECCCCHHHH
GIHMLMGATFPSAVTAAANSPHKAGVDQPESVVAIAEYPEDFIGVFTVNYAAMQYKSRND
HHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHEEEEECCCCHHHHHEEEEHHHHHHCCCCC
QLNQLDGDQARMDIGREDLRVFLKGAEETPAIEKKSEKGFGWATDLHVQNFLECVRSRNT
HHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
PAAPMKLAFQAALVVQMANLSLKGGRRMRWNGTRVI
CCCHHHHHHHHHHHHHHHCCEECCCCEEECCCCCCC
>Mature Secondary Structure 
PIGRRSFLLAGAGALAAHALPPSDQVVLGVIGSGSRGTFVMGVFQKDPALRVGAICDVY
CCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCEECCC
EPNLENAISVASKVSGNHPKVYRNYKELLADKDVEAVLIATPEHWHYQMVLDALAAGKDV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCE
YVEKPLCQTPEQGIALVEAEKKTKQIIQVGMQRRSYDLYKEGRAVVASGKLGSVRMVRSW
EECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCCCHHHHHHH
WLNNYVNSARATKLAGPLDWEQWQGSAPRRPLDADRFRNWRYYADYAGGIVADQGAHVFD
HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCEEEEECCCCEEECCCCHHHH
GIHMLMGATFPSAVTAAANSPHKAGVDQPESVVAIAEYPEDFIGVFTVNYAAMQYKSRND
HHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHEEEEECCCCHHHHHEEEEHHHHHHCCCCC
QLNQLDGDQARMDIGREDLRVFLKGAEETPAIEKKSEKGFGWATDLHVQNFLECVRSRNT
HHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
PAAPMKLAFQAALVVQMANLSLKGGRRMRWNGTRVI
CCCHHHHHHHHHHHHHHHCCEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA