Click here to switch to the map view.

The map label for this gene is 116623341

Identifier: 116623341

GI number: 116623341

Start: 5376169

End: 5377341

Strand: Direct

Name: 116623341

Synonym: Acid_4250

Alternate gene names: NA

Gene position: 5376169-5377341 (Clockwise)

Preceding gene: 116623338

Following gene: 116623342

Centisome position: 53.95

GC content: 64.19

Gene sequence:

>1173_bases
ATGAAGCGTGTCGCCATACTCGGGGGTGGACCGGCGGGAGCCTTCGCCGCGGAAACGCTGGCATCGGCGGGCCTGGGCGT
CATTCTGATGGACGAGAAGCTGGCGTGGGAAAAGCCCTGCGGCGGCGGCCTCACCCATAAAGCGTACAGCCAGTACCCAT
TCCTGATTGAGAATTCCACGCCCAAACGGCTGGTGACGGAAACGGTGTTGGCGGCGCCGAAAGCGGGCGAAGTCACCCTG
CAACTGGGCGACCCGCTGCTCATCTATTCCCGCCTCGATTTAAATCGCATGCTGCTGGAGCGCGCCGAACGGGCCGGCGC
GCAGATCGAAAAAACACGCGTCATGGAGATGAATCGCAAGGGCTCGGGATGGCAGTTGCGCACCGCCGCTGGAAACCTGG
ACGCCGATTTCTGCATTGTGGCGACCGGCGCCCGCAATCCGCTGCGCGACGTCGGCACGCAACTCACGCCGCCGGACACG
ATGGCGGCGCTCGGTTACTACGTGCAGGGTGACCAGGCGCGCATCGACATTCAATTTCTACCGGACCTGGAAGGCTACAT
CTGGATTTTCCCGCGCTGCGGCCATCTTTCCATCGGCATTTGCGGTAAGGGCGAGCCGGCCAGCTCGCTGCGGAAGCGCC
TGGAAGCCTACATGGCGGGGCGCGGCATCAACTGGAAGGGCGCCGCGTTCTACAGCCACCTGCTGCCTTCCCTGGACACC
AAATCGTGGAAGCAGAACCGCGTCTCGGGCGAGGGCTGGATGGCGGTGGGCGATGCCGCCGGGCTGGTGGACCCGATCAC
CGGAGAGGGTCTTTACTACGCCATCCGCTCGGCGGACCTGGCGGCGCAAAGCCTGCTCGCCGACGCCGGACAGGAGGAGA
ACGCCCTGCAATACAGGCGCCTGCTGCGCCGCGATTTCGCGGCCGACCTGGAATTCGGTTCGCGCCTGGCCAAACGGGTG
TTCATGGGACGCTTTATGCTGGGCACGGTGCCGCAGCGTATGGTGGAGTTCACGCGCCGCAGTCCGCGCTTCGCCAACGT
GATGCAGGATCTCTTCGCCGGCAAACAGCCCTACCTGGGACTCAAGCGCCGTCTGCTGCGCAACCTCAACGGCAGCCTGT
ATGAGATCGCGATGAGTTTCGGCTTTAGCCGCGTAGTTCCCAAGGCAGGATAA

Upstream 100 bases:

>100_bases
CGCCTGGCGACAACCCGCACGGTGGAGGAGCCATGGCAGCTCCGGGCGCGCCGGGCAAGATGCCGGCTCCCGAAGATCTG
CCCCCGGCCGGCAAAAAGAA

Downstream 100 bases:

>100_bases
CGGCCGCCGCTTCGACATCGATATGACCCACACAAAATCCGAAGAATTGTTTCGCCGCGCCGTGGAGAAGATTCCGGGCG
GCGTGAACTCGCCGGTGCGC

Product: geranylgeranyl reductase

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MKRVAILGGGPAGAFAAETLASAGLGVILMDEKLAWEKPCGGGLTHKAYSQYPFLIENSTPKRLVTETVLAAPKAGEVTL
QLGDPLLIYSRLDLNRMLLERAERAGAQIEKTRVMEMNRKGSGWQLRTAAGNLDADFCIVATGARNPLRDVGTQLTPPDT
MAALGYYVQGDQARIDIQFLPDLEGYIWIFPRCGHLSIGICGKGEPASSLRKRLEAYMAGRGINWKGAAFYSHLLPSLDT
KSWKQNRVSGEGWMAVGDAAGLVDPITGEGLYYAIRSADLAAQSLLADAGQEENALQYRRLLRRDFAADLEFGSRLAKRV
FMGRFMLGTVPQRMVEFTRRSPRFANVMQDLFAGKQPYLGLKRRLLRNLNGSLYEIAMSFGFSRVVPKAG

Sequences:

>Translated_390_residues
MKRVAILGGGPAGAFAAETLASAGLGVILMDEKLAWEKPCGGGLTHKAYSQYPFLIENSTPKRLVTETVLAAPKAGEVTL
QLGDPLLIYSRLDLNRMLLERAERAGAQIEKTRVMEMNRKGSGWQLRTAAGNLDADFCIVATGARNPLRDVGTQLTPPDT
MAALGYYVQGDQARIDIQFLPDLEGYIWIFPRCGHLSIGICGKGEPASSLRKRLEAYMAGRGINWKGAAFYSHLLPSLDT
KSWKQNRVSGEGWMAVGDAAGLVDPITGEGLYYAIRSADLAAQSLLADAGQEENALQYRRLLRRDFAADLEFGSRLAKRV
FMGRFMLGTVPQRMVEFTRRSPRFANVMQDLFAGKQPYLGLKRRLLRNLNGSLYEIAMSFGFSRVVPKAG
>Mature_390_residues
MKRVAILGGGPAGAFAAETLASAGLGVILMDEKLAWEKPCGGGLTHKAYSQYPFLIENSTPKRLVTETVLAAPKAGEVTL
QLGDPLLIYSRLDLNRMLLERAERAGAQIEKTRVMEMNRKGSGWQLRTAAGNLDADFCIVATGARNPLRDVGTQLTPPDT
MAALGYYVQGDQARIDIQFLPDLEGYIWIFPRCGHLSIGICGKGEPASSLRKRLEAYMAGRGINWKGAAFYSHLLPSLDT
KSWKQNRVSGEGWMAVGDAAGLVDPITGEGLYYAIRSADLAAQSLLADAGQEENALQYRRLLRRDFAADLEFGSRLAKRV
FMGRFMLGTVPQRMVEFTRRSPRFANVMQDLFAGKQPYLGLKRRLLRNLNGSLYEIAMSFGFSRVVPKAG

Specific function: Unknown

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. ChlP subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: NA

Molecular weight: Translated: 42800; Mature: 42800

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVAILGGGPAGAFAAETLASAGLGVILMDEKLAWEKPCGGGLTHKAYSQYPFLIENST
CCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEECCC
PKRLVTETVLAAPKAGEVTLQLGDPLLIYSRLDLNRMLLERAERAGAQIEKTRVMEMNRK
CHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
GSGWQLRTAAGNLDADFCIVATGARNPLRDVGTQLTPPDTMAALGYYVQGDQARIDIQFL
CCCEEEEEECCCCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHEEECCCEEEEEEEC
PDLEGYIWIFPRCGHLSIGICGKGEPASSLRKRLEAYMAGRGINWKGAAFYSHLLPSLDT
CCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
KSWKQNRVSGEGWMAVGDAAGLVDPITGEGLYYAIRSADLAAQSLLADAGQEENALQYRR
CHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHH
LLRRDFAADLEFGSRLAKRVFMGRFMLGTVPQRMVEFTRRSPRFANVMQDLFAGKQPYLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHH
LKRRLLRNLNGSLYEIAMSFGFSRVVPKAG
HHHHHHHHCCCHHHHHHHHHCHHHCCCCCC
>Mature Secondary Structure
MKRVAILGGGPAGAFAAETLASAGLGVILMDEKLAWEKPCGGGLTHKAYSQYPFLIENST
CCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEECCC
PKRLVTETVLAAPKAGEVTLQLGDPLLIYSRLDLNRMLLERAERAGAQIEKTRVMEMNRK
CHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
GSGWQLRTAAGNLDADFCIVATGARNPLRDVGTQLTPPDTMAALGYYVQGDQARIDIQFL
CCCEEEEEECCCCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHEEECCCEEEEEEEC
PDLEGYIWIFPRCGHLSIGICGKGEPASSLRKRLEAYMAGRGINWKGAAFYSHLLPSLDT
CCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
KSWKQNRVSGEGWMAVGDAAGLVDPITGEGLYYAIRSADLAAQSLLADAGQEENALQYRR
CHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHH
LLRRDFAADLEFGSRLAKRVFMGRFMLGTVPQRMVEFTRRSPRFANVMQDLFAGKQPYLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHH
LKRRLLRNLNGSLYEIAMSFGFSRVVPKAG
HHHHHHHHCCCHHHHHHHHHCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9063468 [H]