| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is yiaD [C]
Identifier: 116623181
GI number: 116623181
Start: 5196369
End: 5199104
Strand: Direct
Name: yiaD [C]
Synonym: Acid_4088
Alternate gene names: 116623181
Gene position: 5196369-5199104 (Clockwise)
Preceding gene: 116623180
Following gene: 116623183
Centisome position: 52.14
GC content: 60.96
Gene sequence:
>2736_bases ATGAAAAAATTAGCAGCGATAGGCGCGCTCGGGTTTCTGGCGTCTGGTCTGTTCGCGCAGGGGTTGAACACAGGGGGCCA AACTAAGGATGATTGGGAGGAAATTAATTTTGAATTTAATTCCTCGATCCTGTCGGACGGCTACCCGAGCTTGCTCCGCT TGGCGGACTTACTGAGCCAGCATCGCGATTATAAAGTGAAAGTAACGGGCCACACGGACTACGTGGGGTCGGCGGCATAC AATGACAAACTCGCGCTGAGGCGCGCAGACGCAGTGAAGGCGTTCCTGGTGAAGTACGGGGTTGGGGACGCACAGGTCAC GACATCAGGCGACGGAAAGCGTTCGCCGATCGTGGACAACAAGACCAAAGAAGGCCGTTTCATGAACCGCCGCGTAGATT TGGCGGTGACTGACGGCAGCGGCAGACTGATCAAAGAAGGCGGAATCGGGGACGTCATTAACAGCTTGATGAGCAAGCTG GACGATATGGCGAAAAAGCAGCAGGAATGCTGCGACCAGATTCTCAAGAAGCTCGACAAGCTGGACGATATTCTGGCGCA GTTGAAGACTCTGCAAGGGGACAATGCGAAACTGCAATCCCAGGTGGACGACCTGCGCAACCAGCACAATGCGTTGAAGG ATCAGGTGGCGGGACTGCCGAAGCCGCTTACCTCTTCGCAGACGCAGGACATCGCGCACACGGAAGCTCTGGGCGCAGTG GACGAGTCGCAGAGGCGGAACAAGAAATTTTCGGTTGTCAGCGCGAACATCGGGCCGACGTATGGCGCGGGACGCACGGG CAACTTCACATTCAGCGGCCGCGGGCAGTTCTTCTCGCCGTTTGGCGGCGATGGCACACGCGCGGTGCAGGCGCAAGGCG AATACATGTACTATCCGGGCCGGCAGGAAGGCCAGTTCGATATTGGTCTTGTGAATCGCTGGGGCAGCATCCAGGCCGGC GCCTTCGGCAGCTTCAAATACCTCAACTTCAAAGGCAACCAGCAGGGCGGCGGACTGGGACAGGCTGCTTTTCTGTTCGA CTATGTATTCTCGCGCGGACGCATCGGCATCTTCGGGACGCAGGGCTTCAAGAATACGGCGATCCTGAATTCGGTGCAAC TGGGTCCGCAATCGTTCCTGCAGACGTACGCACAGATCGTGAACCAGTACGGCGGCAGCGCGCTGGTAGGGGTATGGGGC AATGCCTACATCGAGGGCAACCTGGCATATCTGCGCAACAAGAATCCGAACCAGAGCGACGCACCGGGCGGGTCAGTGAG ACTGGTCCAGCCGCTGAACGAGCACGTAGCGTTCACGGCGGAAGCCGGGTTCAACGAAACCTTGCTGAATACCAACGATT CGGGCCGCGTGGTGTTCGGACTCCAGCTGGGCAACTACATTCACCCGAAGGATTACGGCAAGACAAAGAGCCCGGTTCCG ATGGACGTGCCGCGCGTGCGTTACCAACTGCTGACGCGGCGCCTCGGGAACAGCCCGCCGGTAGCGAATGCGGGTCCGGA CCAGGTTGGCGTACCGGGCGGAACGGTGACGCTGGATGGCTCGGCGTCGTACGATCCGGATAACGATCCGATCACGTATC AGTGGACGCAGATCGGCGGGAACAGCGTGACGCTGGCGACGCCGACGGCGGCGAAGACTACGTTTACGGCGGTGGCCGGA CAGACGTACATCTTCAAATTGACGGTTACGGATACGGGCGGGCTGAGCTCCTCGGCGACGACCCGGGTTACGGCGACAAC GCCGGCCACGGCGACAATCGTGCGCTTCGACGCGACACCGAACCAGATCTCGGCGGGCCAGAGCTCGACGCTGACGTGGA TCGTGCAGGGCGCGACGAGCGTTTCGATCAACAACGGCATCGGCAACGTGGCGGCCTCGGGTTCGACCACGGTGAGCCCG ACGGCGACCACCACTTACACTCTGACGGCGGTCGGCCCGAACGGCAACGTGACGGCGAATGCGATCGTGACGGTTGGGGC GGGCGGAACGACTTCGGCGCAGATTATCCGCTTCGAAGGAAACCCGCTATCGATTCAGCCGGGTCAGCAATCGACGCTGA GCTGGACCACGACCGGGGCGACCCAGGTATCGATCAGCGGCGTAGGCGCGGTGACACCGAATGGCAGCACGACGGTGACG CCGACGCAGACGACGACGTACACGTTATCGGCGACGGGATCGGACGGCAAGACAGTGACGGCCCCGATCACGATCACGGT GGCGAGCGGCACGGTACCTCAGGTAGTGGTGTTCGTGGCGACCCCGCAAAACATCGATGCCGGCAGCTCTACGAAGCTGT GCTGGCAGGTGACGGGCGCGACGAGCATCTCGATTCAGCCGGGCGTGGGCAGCAATCTGAATGCGAATGATTGCGCCACG GTAAGCCCGACGGCGACGACGACCTATACGCTGACGGCGACCAACGCGACGGGCCAGATACAGGCCAACGCGACGGTAAA CGTGGGCACGGTGAGGATCACGTCGTTCACGGCCGATCCGGTGACATCGACGGCGGCAGGCTCGCCGGTTACGCTCTCGT GGACGACAGAGAACGCCACTTCGGTGGTTCTGATCGGCAGCGAGATCGGGCCGCAGACCCTGCCGGCGAACGGCACGTTT GTGATCCACCCGATCACGAATTCGACGTATACATTGACGGCGTACGGTAATGGGGGCCAGACAGTCAGCGCCACCATATC GGTATTCGTCAGGTAG
Upstream 100 bases:
>100_bases AGTTTGGAATCTCGCGTGCTAGCACGAAAGCCAATGTCAGATACATGACAGGATTTTCGGTTTTCTCGCACAGGTAGGAT ATGAGGAGAATTAGAAGAAA
Downstream 100 bases:
>100_bases CGGAGAAGTCCATAGGAGTAGTGAATCGCCGGGCGGCCAGAGATGGCCGCCCGGTTTTTTTGTGTGAGCGCTGCGGTATG GATGAGGCGTGCTTAGAGAG
Product: OmpA/MotB domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 911; Mature: 911
Protein sequence:
>911_residues MKKLAAIGALGFLASGLFAQGLNTGGQTKDDWEEINFEFNSSILSDGYPSLLRLADLLSQHRDYKVKVTGHTDYVGSAAY NDKLALRRADAVKAFLVKYGVGDAQVTTSGDGKRSPIVDNKTKEGRFMNRRVDLAVTDGSGRLIKEGGIGDVINSLMSKL DDMAKKQQECCDQILKKLDKLDDILAQLKTLQGDNAKLQSQVDDLRNQHNALKDQVAGLPKPLTSSQTQDIAHTEALGAV DESQRRNKKFSVVSANIGPTYGAGRTGNFTFSGRGQFFSPFGGDGTRAVQAQGEYMYYPGRQEGQFDIGLVNRWGSIQAG AFGSFKYLNFKGNQQGGGLGQAAFLFDYVFSRGRIGIFGTQGFKNTAILNSVQLGPQSFLQTYAQIVNQYGGSALVGVWG NAYIEGNLAYLRNKNPNQSDAPGGSVRLVQPLNEHVAFTAEAGFNETLLNTNDSGRVVFGLQLGNYIHPKDYGKTKSPVP MDVPRVRYQLLTRRLGNSPPVANAGPDQVGVPGGTVTLDGSASYDPDNDPITYQWTQIGGNSVTLATPTAAKTTFTAVAG QTYIFKLTVTDTGGLSSSATTRVTATTPATATIVRFDATPNQISAGQSSTLTWIVQGATSVSINNGIGNVAASGSTTVSP TATTTYTLTAVGPNGNVTANAIVTVGAGGTTSAQIIRFEGNPLSIQPGQQSTLSWTTTGATQVSISGVGAVTPNGSTTVT PTQTTTYTLSATGSDGKTVTAPITITVASGTVPQVVVFVATPQNIDAGSSTKLCWQVTGATSISIQPGVGSNLNANDCAT VSPTATTTYTLTATNATGQIQANATVNVGTVRITSFTADPVTSTAAGSPVTLSWTTENATSVVLIGSEIGPQTLPANGTF VIHPITNSTYTLTAYGNGGQTVSATISVFVR
Sequences:
>Translated_911_residues MKKLAAIGALGFLASGLFAQGLNTGGQTKDDWEEINFEFNSSILSDGYPSLLRLADLLSQHRDYKVKVTGHTDYVGSAAY NDKLALRRADAVKAFLVKYGVGDAQVTTSGDGKRSPIVDNKTKEGRFMNRRVDLAVTDGSGRLIKEGGIGDVINSLMSKL DDMAKKQQECCDQILKKLDKLDDILAQLKTLQGDNAKLQSQVDDLRNQHNALKDQVAGLPKPLTSSQTQDIAHTEALGAV DESQRRNKKFSVVSANIGPTYGAGRTGNFTFSGRGQFFSPFGGDGTRAVQAQGEYMYYPGRQEGQFDIGLVNRWGSIQAG AFGSFKYLNFKGNQQGGGLGQAAFLFDYVFSRGRIGIFGTQGFKNTAILNSVQLGPQSFLQTYAQIVNQYGGSALVGVWG NAYIEGNLAYLRNKNPNQSDAPGGSVRLVQPLNEHVAFTAEAGFNETLLNTNDSGRVVFGLQLGNYIHPKDYGKTKSPVP MDVPRVRYQLLTRRLGNSPPVANAGPDQVGVPGGTVTLDGSASYDPDNDPITYQWTQIGGNSVTLATPTAAKTTFTAVAG QTYIFKLTVTDTGGLSSSATTRVTATTPATATIVRFDATPNQISAGQSSTLTWIVQGATSVSINNGIGNVAASGSTTVSP TATTTYTLTAVGPNGNVTANAIVTVGAGGTTSAQIIRFEGNPLSIQPGQQSTLSWTTTGATQVSISGVGAVTPNGSTTVT PTQTTTYTLSATGSDGKTVTAPITITVASGTVPQVVVFVATPQNIDAGSSTKLCWQVTGATSISIQPGVGSNLNANDCAT VSPTATTTYTLTATNATGQIQANATVNVGTVRITSFTADPVTSTAAGSPVTLSWTTENATSVVLIGSEIGPQTLPANGTF VIHPITNSTYTLTAYGNGGQTVSATISVFVR >Mature_911_residues MKKLAAIGALGFLASGLFAQGLNTGGQTKDDWEEINFEFNSSILSDGYPSLLRLADLLSQHRDYKVKVTGHTDYVGSAAY NDKLALRRADAVKAFLVKYGVGDAQVTTSGDGKRSPIVDNKTKEGRFMNRRVDLAVTDGSGRLIKEGGIGDVINSLMSKL DDMAKKQQECCDQILKKLDKLDDILAQLKTLQGDNAKLQSQVDDLRNQHNALKDQVAGLPKPLTSSQTQDIAHTEALGAV DESQRRNKKFSVVSANIGPTYGAGRTGNFTFSGRGQFFSPFGGDGTRAVQAQGEYMYYPGRQEGQFDIGLVNRWGSIQAG AFGSFKYLNFKGNQQGGGLGQAAFLFDYVFSRGRIGIFGTQGFKNTAILNSVQLGPQSFLQTYAQIVNQYGGSALVGVWG NAYIEGNLAYLRNKNPNQSDAPGGSVRLVQPLNEHVAFTAEAGFNETLLNTNDSGRVVFGLQLGNYIHPKDYGKTKSPVP MDVPRVRYQLLTRRLGNSPPVANAGPDQVGVPGGTVTLDGSASYDPDNDPITYQWTQIGGNSVTLATPTAAKTTFTAVAG QTYIFKLTVTDTGGLSSSATTRVTATTPATATIVRFDATPNQISAGQSSTLTWIVQGATSVSINNGIGNVAASGSTTVSP TATTTYTLTAVGPNGNVTANAIVTVGAGGTTSAQIIRFEGNPLSIQPGQQSTLSWTTTGATQVSISGVGAVTPNGSTTVT PTQTTTYTLSATGSDGKTVTAPITITVASGTVPQVVVFVATPQNIDAGSSTKLCWQVTGATSISIQPGVGSNLNANDCAT VSPTATTTYTLTATNATGQIQANATVNVGTVRITSFTADPVTSTAAGSPVTLSWTTENATSVVLIGSEIGPQTLPANGTF VIHPITNSTYTLTAYGNGGQTVSATISVFVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013783 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95299; Mature: 95299
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: PS51123 OMPA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLAAIGALGFLASGLFAQGLNTGGQTKDDWEEINFEFNSSILSDGYPSLLRLADLLSQ CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEECCCHHCCCCHHHHHHHHHHHC HRDYKVKVTGHTDYVGSAAYNDKLALRRADAVKAFLVKYGVGDAQVTTSGDGKRSPIVDN CCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC KTKEGRFMNRRVDLAVTDGSGRLIKEGGIGDVINSLMSKLDDMAKKQQECCDQILKKLDK CCCCCCEECEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDDILAQLKTLQGDNAKLQSQVDDLRNQHNALKDQVAGLPKPLTSSQTQDIAHTEALGAV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC DESQRRNKKFSVVSANIGPTYGAGRTGNFTFSGRGQFFSPFGGDGTRAVQAQGEYMYYPG CHHHHCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEECCCCCCCCEEEEECCCEEECCC RQEGQFDIGLVNRWGSIQAGAFGSFKYLNFKGNQQGGGLGQAAFLFDYVFSRGRIGIFGT CCCCCEEEEEEECCCCEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEC QGFKNTAILNSVQLGPQSFLQTYAQIVNQYGGSALVGVWGNAYIEGNLAYLRNKNPNQSD CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCEEEEECCCCCCCC APGGSVRLVQPLNEHVAFTAEAGFNETLLNTNDSGRVVFGLQLGNYIHPKDYGKTKSPVP CCCCCEEEEEECCCCEEEEECCCCCCEEECCCCCCCEEEEEEECCEECCCCCCCCCCCCC MDVPRVRYQLLTRRLGNSPPVANAGPDQVGVPGGTVTLDGSASYDPDNDPITYQWTQIGG CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECC NSVTLATPTAAKTTFTAVAGQTYIFKLTVTDTGGLSSSATTRVTATTPATATIVRFDATP CEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCC NQISAGQSSTLTWIVQGATSVSINNGIGNVAASGSTTVSPTATTTYTLTAVGPNGNVTAN CCCCCCCCCEEEEEEECCEEEEECCCCCCEECCCCCEECCCCEEEEEEEEECCCCCEEEE AIVTVGAGGTTSAQIIRFEGNPLSIQPGQQSTLSWTTTGATQVSISGVGAVTPNGSTTVT EEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEEEECCCEEEEEEEEEEECCCCCEEEC PTQTTTYTLSATGSDGKTVTAPITITVASGTVPQVVVFVATPQNIDAGSSTKLCWQVTGA CCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECC TSISIQPGVGSNLNANDCATVSPTATTTYTLTATNATGQIQANATVNVGTVRITSFTADP EEEEECCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCEEEECCEEEEEEEEEEEEECCC VTSTAAGSPVTLSWTTENATSVVLIGSEIGPQTLPANGTFVIHPITNSTYTLTAYGNGGQ CCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCC TVSATISVFVR EEEEEEEEEEC >Mature Secondary Structure MKKLAAIGALGFLASGLFAQGLNTGGQTKDDWEEINFEFNSSILSDGYPSLLRLADLLSQ CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEECCCHHCCCCHHHHHHHHHHHC HRDYKVKVTGHTDYVGSAAYNDKLALRRADAVKAFLVKYGVGDAQVTTSGDGKRSPIVDN CCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC KTKEGRFMNRRVDLAVTDGSGRLIKEGGIGDVINSLMSKLDDMAKKQQECCDQILKKLDK CCCCCCEECEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDDILAQLKTLQGDNAKLQSQVDDLRNQHNALKDQVAGLPKPLTSSQTQDIAHTEALGAV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC DESQRRNKKFSVVSANIGPTYGAGRTGNFTFSGRGQFFSPFGGDGTRAVQAQGEYMYYPG CHHHHCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEECCCCCCCCEEEEECCCEEECCC RQEGQFDIGLVNRWGSIQAGAFGSFKYLNFKGNQQGGGLGQAAFLFDYVFSRGRIGIFGT CCCCCEEEEEEECCCCEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEC QGFKNTAILNSVQLGPQSFLQTYAQIVNQYGGSALVGVWGNAYIEGNLAYLRNKNPNQSD CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCEEEEECCCCCCCC APGGSVRLVQPLNEHVAFTAEAGFNETLLNTNDSGRVVFGLQLGNYIHPKDYGKTKSPVP CCCCCEEEEEECCCCEEEEECCCCCCEEECCCCCCCEEEEEEECCEECCCCCCCCCCCCC MDVPRVRYQLLTRRLGNSPPVANAGPDQVGVPGGTVTLDGSASYDPDNDPITYQWTQIGG CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECC NSVTLATPTAAKTTFTAVAGQTYIFKLTVTDTGGLSSSATTRVTATTPATATIVRFDATP CEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCC NQISAGQSSTLTWIVQGATSVSINNGIGNVAASGSTTVSPTATTTYTLTAVGPNGNVTAN CCCCCCCCCEEEEEEECCEEEEECCCCCCEECCCCCEECCCCEEEEEEEEECCCCCEEEE AIVTVGAGGTTSAQIIRFEGNPLSIQPGQQSTLSWTTTGATQVSISGVGAVTPNGSTTVT EEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEEEECCCEEEEEEEEEEECCCCCEEEC PTQTTTYTLSATGSDGKTVTAPITITVASGTVPQVVVFVATPQNIDAGSSTKLCWQVTGA CCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECC TSISIQPGVGSNLNANDCATVSPTATTTYTLTATNATGQIQANATVNVGTVRITSFTADP EEEEECCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCEEEECCEEEEEEEEEEEEECCC VTSTAAGSPVTLSWTTENATSVVLIGSEIGPQTLPANGTFVIHPITNSTYTLTAYGNGGQ CCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCC TVSATISVFVR EEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA