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The map label for this gene is 116622938

Identifier: 116622938

GI number: 116622938

Start: 4873176

End: 4873793

Strand: Direct

Name: 116622938

Synonym: Acid_3840

Alternate gene names: NA

Gene position: 4873176-4873793 (Clockwise)

Preceding gene: 116622935

Following gene: 116622939

Centisome position: 48.9

GC content: 61.97

Gene sequence:

>618_bases
TTGGCCGATTTGATAGAATCGGGCGGGATGCCGTCAACCGGGGCCAATGTTACGCAGCTCCTGGAGCGCTGGCGAAACGG
AGATCCGACTTCGTTTGACGCGGCCAGCGATTTGCTCTATAGCGAGCTCCATCGAATCGCCCAATCGTATCTCCGCGGAG
CCGCTCCCAACACGCTCCAGCCCACCGCACTGGTCAACGAGGCGTACGTTCGCCTTGTGGAACGCTCCCATGGCGAGTTT
CGCGACCGCAAGCACTTCTTTGCGCTTGCCGCCAAGGTGATGCGGCAGATCCTGGTAGACCGGGCACGTGCACGCAACGC
CTCCAAACGGGGCGGGGAAAATGCACGCCGCGTACCTCTCGATGACGCACGTGATGGCTTCACGTCCGATCCCGATGAAT
TTCTCCTCCTCCACCAGGCGCTGGACCGGCTCAGCGACTATGATTTCTCCCTCGCCAACGTGATCGAATTGCGCTACTTC
GCCGGACTCACTCTCGAGGAGACGGCGGAAATCGTCGGCATTTCCGTACCGACCGCCAGCCGCCGCCAGCGCATGGCCGA
GGCGTGGCTGAGCCGCGAGATTTCGGTGAAAACCGCTCCTGCCCAATCCTCCGGGTGA

Upstream 100 bases:

>100_bases
CCTGCGGCAATTCCGATTTCAGCGCCATAGTCTTCAACACCTCGTGCTTCTACATATACGCCTTTTTCTTATTCGTGTCC
ATTCGTGGCCCTTCCGACCT

Downstream 100 bases:

>100_bases
TCGGCTGCGAGCCTTTTTTCCGTTTGTGCCGTTAAGGACGGCCAAAAATTGAACCGCGATCGGGAAAATTTCGAAGCTCT
GTTCGCGTATGCCGCAGACT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-E Factor; Sigma-70 Region 4 Family; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MADLIESGGMPSTGANVTQLLERWRNGDPTSFDAASDLLYSELHRIAQSYLRGAAPNTLQPTALVNEAYVRLVERSHGEF
RDRKHFFALAAKVMRQILVDRARARNASKRGGENARRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYF
AGLTLEETAEIVGISVPTASRRQRMAEAWLSREISVKTAPAQSSG

Sequences:

>Translated_205_residues
MADLIESGGMPSTGANVTQLLERWRNGDPTSFDAASDLLYSELHRIAQSYLRGAAPNTLQPTALVNEAYVRLVERSHGEF
RDRKHFFALAAKVMRQILVDRARARNASKRGGENARRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYF
AGLTLEETAEIVGISVPTASRRQRMAEAWLSREISVKTAPAQSSG
>Mature_204_residues
ADLIESGGMPSTGANVTQLLERWRNGDPTSFDAASDLLYSELHRIAQSYLRGAAPNTLQPTALVNEAYVRLVERSHGEFR
DRKHFFALAAKVMRQILVDRARARNASKRGGENARRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFA
GLTLEETAEIVGISVPTASRRQRMAEAWLSREISVKTAPAQSSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22807; Mature: 22676

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLIESGGMPSTGANVTQLLERWRNGDPTSFDAASDLLYSELHRIAQSYLRGAAPNTLQ
CCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PTALVNEAYVRLVERSHGEFRDRKHFFALAAKVMRQILVDRARARNASKRGGENARRVPL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
DDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFAGLTLEETAEIVGISVPTAS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHH
RRQRMAEAWLSREISVKTAPAQSSG
HHHHHHHHHHHHCCCEEECCCCCCC
>Mature Secondary Structure 
ADLIESGGMPSTGANVTQLLERWRNGDPTSFDAASDLLYSELHRIAQSYLRGAAPNTLQ
CCCHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PTALVNEAYVRLVERSHGEFRDRKHFFALAAKVMRQILVDRARARNASKRGGENARRVPL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
DDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFAGLTLEETAEIVGISVPTAS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHH
RRQRMAEAWLSREISVKTAPAQSSG
HHHHHHHHHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA