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The map label for this gene is arnC [H]

Identifier: 116622926

GI number: 116622926

Start: 4860502

End: 4861341

Strand: Reverse

Name: arnC [H]

Synonym: Acid_3828

Alternate gene names: 116622926

Gene position: 4861341-4860502 (Counterclockwise)

Preceding gene: 116622928

Following gene: 116622925

Centisome position: 48.78

GC content: 67.02

Gene sequence:

>840_bases
ATGCAAAGCAGTTACAGTGGAAAGAGCAAAATGGCCGCCGCCCCTCACACCGGAGAAGCCGGACGAATCATCGCCGCACC
CACGGGACCGCTGATTGTAGCGGCTGCGAATGCAGGCGACGATGCGCCGGAGCTTTCGGTGGTGGTGCCGACGCTGAACG
AGAGCGAGAACATCGTGGATTTTCTGGCGGCGGTACGGCGCACGCTGGACGCGAGCCTTCCGGGGCGCTACGAAGTGATC
GTGGTGGACGACGATAGCGCCGATGGGACCGGCACGATCGCGGCATCGTTGATGTGCGGGTTCCCCGAGTTGCGCGTGGT
GAGGCGGCAGAACGAGGGCGGCCTCGCGGTGGCGGTGATTCGCGGCTGGCAGGTGGCGCGCGGCAAAATGCTCGGCACGA
TCAATGCCGATTTTCAACATCCGCCGGATGTTCTGGGCCGCCTCCTGGAGCGCGAAGCGGGCGCGGACCTGCTGGTGGCC
ACGCGCCACAGCGACGGCGGCGGGTTGGGCGATTGGGGGCTCACGCGGCGGATCACTTCGTGGGGCGCGGCGCAGATCGG
CAAGTGGCTGCTGCCGGAAGTTTACGCACGCGTGAGCGATCCGCTGAGCGGCTGCTACCTGGTGCGGCGGAGTGCGATCG
CAGGGGCGGTGCTGCGTCCGCTGGGATACAAAAGCCTGATGGAGATCCTGGTGCGCGGCAACGTGCGGGAGATCCACGAA
TGCGGGTACGAGATGCGCAAGCGGGAGCGCGGGCAAAGCAAGGTGCACGTGCTGCATCCACTGCAATACCTGCGCCATGT
GATGCGCCTGCGCGCCGCGGCCCGGGAGCGGGGGCGGTAG

Upstream 100 bases:

>100_bases
CGGCGGCGCAAAGCGAAAGCGTAGTTCCCAATAGTAGAGCGAGTGTCTTTTTCATTAGTATCATCCTCGTTGACGTGGTG
GCCAGTATATCCCATTTCTG

Downstream 100 bases:

>100_bases
TGGTTCGGCAGGATAAGTACGACGCGAAAAACCCGGTGGTGAAGTTCGTGATCGAACGCTTCTTCGCGCGACTGCGTGCT
GTGATGGCAGAGCTTGGTCC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MQSSYSGKSKMAAAPHTGEAGRIIAAPTGPLIVAAANAGDDAPELSVVVPTLNESENIVDFLAAVRRTLDASLPGRYEVI
VVDDDSADGTGTIAASLMCGFPELRVVRRQNEGGLAVAVIRGWQVARGKMLGTINADFQHPPDVLGRLLEREAGADLLVA
TRHSDGGGLGDWGLTRRITSWGAAQIGKWLLPEVYARVSDPLSGCYLVRRSAIAGAVLRPLGYKSLMEILVRGNVREIHE
CGYEMRKRERGQSKVHVLHPLQYLRHVMRLRAAARERGR

Sequences:

>Translated_279_residues
MQSSYSGKSKMAAAPHTGEAGRIIAAPTGPLIVAAANAGDDAPELSVVVPTLNESENIVDFLAAVRRTLDASLPGRYEVI
VVDDDSADGTGTIAASLMCGFPELRVVRRQNEGGLAVAVIRGWQVARGKMLGTINADFQHPPDVLGRLLEREAGADLLVA
TRHSDGGGLGDWGLTRRITSWGAAQIGKWLLPEVYARVSDPLSGCYLVRRSAIAGAVLRPLGYKSLMEILVRGNVREIHE
CGYEMRKRERGQSKVHVLHPLQYLRHVMRLRAAARERGR
>Mature_279_residues
MQSSYSGKSKMAAAPHTGEAGRIIAAPTGPLIVAAANAGDDAPELSVVVPTLNESENIVDFLAAVRRTLDASLPGRYEVI
VVDDDSADGTGTIAASLMCGFPELRVVRRQNEGGLAVAVIRGWQVARGKMLGTINADFQHPPDVLGRLLEREAGADLLVA
TRHSDGGGLGDWGLTRRITSWGAAQIGKWLLPEVYARVSDPLSGCYLVRRSAIAGAVLRPLGYKSLMEILVRGNVREIHE
CGYEMRKRERGQSKVHVLHPLQYLRHVMRLRAAARERGR

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=238, Percent_Identity=28.9915966386555, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71999402, Length=239, Percent_Identity=28.8702928870293, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6325441, Length=236, Percent_Identity=28.8135593220339, Blast_Score=98, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24585265, Length=242, Percent_Identity=30.1652892561983, Blast_Score=87, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 30175; Mature: 30175

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSSYSGKSKMAAAPHTGEAGRIIAAPTGPLIVAAANAGDDAPELSVVVPTLNESENIVD
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHH
FLAAVRRTLDASLPGRYEVIVVDDDSADGTGTIAASLMCGFPELRVVRRQNEGGLAVAVI
HHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHEECCCCCEEEEEE
RGWQVARGKMLGTINADFQHPPDVLGRLLEREAGADLLVATRHSDGGGLGDWGLTRRITS
ECCCHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH
WGAAQIGKWLLPEVYARVSDPLSGCYLVRRSAIAGAVLRPLGYKSLMEILVRGNVREIHE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
CGYEMRKRERGQSKVHVLHPLQYLRHVMRLRAAARERGR
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSSYSGKSKMAAAPHTGEAGRIIAAPTGPLIVAAANAGDDAPELSVVVPTLNESENIVD
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHH
FLAAVRRTLDASLPGRYEVIVVDDDSADGTGTIAASLMCGFPELRVVRRQNEGGLAVAVI
HHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHEECCCCCEEEEEE
RGWQVARGKMLGTINADFQHPPDVLGRLLEREAGADLLVATRHSDGGGLGDWGLTRRITS
ECCCHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH
WGAAQIGKWLLPEVYARVSDPLSGCYLVRRSAIAGAVLRPLGYKSLMEILVRGNVREIHE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
CGYEMRKRERGQSKVHVLHPLQYLRHVMRLRAAARERGR
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA