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The map label for this gene is abfA [H]

Identifier: 116622745

GI number: 116622745

Start: 4620379

End: 4621905

Strand: Reverse

Name: abfA [H]

Synonym: Acid_3644

Alternate gene names: 116622745

Gene position: 4621905-4620379 (Counterclockwise)

Preceding gene: 116622746

Following gene: 116622741

Centisome position: 46.38

GC content: 59.86

Gene sequence:

>1527_bases
ATGAAGACCACACTTACCATTCTGGCGCTGGCAGTTGCAGCGCATGCGCAGGCGCCGGCCGCGCGCATCAAGATCGATAC
CGATCGCCGCATCGGAGAAGTCAGTCCGCTGGTGTTCGGCAATTTCGCCGAGCACCTGGGCCGCATGATCTACGGCGGCA
TCTACGAGGAAGGCAGCCCGCTTTCGGACAAGGATGGCTTCCGCACGGACGTGATGGCCGCGGTGAAGAACCTGGGCGTC
TCCATTCTGCGCTATCCCGGCGGCAACTTCGCATCCGGCTACAACTGGAAGGATGGCGTGGGTCCCAAGGACCAGCGCCC
GGTGCGCCCCGAGCTGGCCTGGAATGACATCGAGACCAATCGCTTCGGCACCGACGAGTTTGTCGAGTATTGCAGGCGCA
TCGGCGCCGAGCCGTTCATCTGCATTAATGCCGGACTGGGCACGATCGACCAGGCGCGCGAATGGGTCGAGTATGCCAAC
GAAGAGCGGCACACTTACTGGGCGGACCAGCGCCGCAAGAACGGGCACGATGCGCCGTGGAAGGTGACTTACTGGGGGCT
CGGCAATGAGATCGACGGCCCCTGGCAACTCGGTCACAAGAGCGCCGAGGAATACGCGCACTTCGCGCTGGAAGCAGCCA
AGGCGATGCGCTCGGTGGATCGGAGCATTAAGCTGATCGCCAGCGGCTCCAGCAACTATGGCGCCGGCGCCGATTGGGCC
GGCTGGAATCGCACAGTCGTCAACACGCTCCGCGACCAGATCGATTACATCTCGCTGCATACCTACATCGGCAACCAGCA
AAACGATCTGGAACGCTTCCTGGGACAATCGCAGGTCAACATCGAGCGCTATATCGATACCACGGCTGCCATCATCCGGG
AGGCACAGGGAGGGCGTCCCAATGCGCGGCCCATCTACATCGCCTACGACGAATGGAACGTCTGGTATCGGGCGCAGAAC
GACAAACACCTGGAGGAGGTTTACAACTTCGAGGATGCGCTCGCCATGGGGATGTTCTTCAACACCTTCTTCCGCCACGC
CGACGTGGTCAAGATGGCCAACCTGGCGCAGATGGTAAACGTGATCGCGCCCATGATGACCAACAAGCAGGGCCTGTTCC
TGCAGCCCACATACTTCCCCGTGGCCGAATACAGCAAGCAGCGGGGTAATATCGCGCTCAACACATTCGTCTCCGCCCCC
ACTTACAAGGTGGGTCCCAGCGAGTTGCCGTATCTCGATGTTTCGACTACTTACAACCCGGGATCGCGCACGCTATTCGT
CAATGTGCTCAACCGCAGCAAGTCCCAGGACATCGCGACGCGGGTCGAAAGCCAGGAAGGCGCGCTGGCCAAATCCGGTG
AAGTATGGCAGATGAATAACGCGGACCTGAAGGCAACGCACACTTTCGGCGACGATAAAAAGGTGGTCCCCACGGTCAAG
CCGCTCACGGCTCAAGTCGAGCGCAATGGGTTGACTTATACCTTCCCGGCGCATTCGTTGACGATATTGAAATTGAAGTT
GGAGTAA

Upstream 100 bases:

>100_bases
CCTGTGCCGACATACGCCTGCCAGGCGCGAAACTGGATGCCGCCACCACCACCGCGCTCGATCGCGTGCTGGCATGGACC
GAAAAACGGAGGGAGTCAAA

Downstream 100 bases:

>100_bases
TCAAAAGATCGCTCCCTCACGGTCGCGGTTCGCTGACGCAGAACGCGGCGTCGGGCTGCGGCGCGCCTGCGTGGAAGTAG
GCCGAGTTGTCCGTTGCCGC

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase 1 [H]

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MKTTLTILALAVAAHAQAPAARIKIDTDRRIGEVSPLVFGNFAEHLGRMIYGGIYEEGSPLSDKDGFRTDVMAAVKNLGV
SILRYPGGNFASGYNWKDGVGPKDQRPVRPELAWNDIETNRFGTDEFVEYCRRIGAEPFICINAGLGTIDQAREWVEYAN
EERHTYWADQRRKNGHDAPWKVTYWGLGNEIDGPWQLGHKSAEEYAHFALEAAKAMRSVDRSIKLIASGSSNYGAGADWA
GWNRTVVNTLRDQIDYISLHTYIGNQQNDLERFLGQSQVNIERYIDTTAAIIREAQGGRPNARPIYIAYDEWNVWYRAQN
DKHLEEVYNFEDALAMGMFFNTFFRHADVVKMANLAQMVNVIAPMMTNKQGLFLQPTYFPVAEYSKQRGNIALNTFVSAP
TYKVGPSELPYLDVSTTYNPGSRTLFVNVLNRSKSQDIATRVESQEGALAKSGEVWQMNNADLKATHTFGDDKKVVPTVK
PLTAQVERNGLTYTFPAHSLTILKLKLE

Sequences:

>Translated_508_residues
MKTTLTILALAVAAHAQAPAARIKIDTDRRIGEVSPLVFGNFAEHLGRMIYGGIYEEGSPLSDKDGFRTDVMAAVKNLGV
SILRYPGGNFASGYNWKDGVGPKDQRPVRPELAWNDIETNRFGTDEFVEYCRRIGAEPFICINAGLGTIDQAREWVEYAN
EERHTYWADQRRKNGHDAPWKVTYWGLGNEIDGPWQLGHKSAEEYAHFALEAAKAMRSVDRSIKLIASGSSNYGAGADWA
GWNRTVVNTLRDQIDYISLHTYIGNQQNDLERFLGQSQVNIERYIDTTAAIIREAQGGRPNARPIYIAYDEWNVWYRAQN
DKHLEEVYNFEDALAMGMFFNTFFRHADVVKMANLAQMVNVIAPMMTNKQGLFLQPTYFPVAEYSKQRGNIALNTFVSAP
TYKVGPSELPYLDVSTTYNPGSRTLFVNVLNRSKSQDIATRVESQEGALAKSGEVWQMNNADLKATHTFGDDKKVVPTVK
PLTAQVERNGLTYTFPAHSLTILKLKLE
>Mature_508_residues
MKTTLTILALAVAAHAQAPAARIKIDTDRRIGEVSPLVFGNFAEHLGRMIYGGIYEEGSPLSDKDGFRTDVMAAVKNLGV
SILRYPGGNFASGYNWKDGVGPKDQRPVRPELAWNDIETNRFGTDEFVEYCRRIGAEPFICINAGLGTIDQAREWVEYAN
EERHTYWADQRRKNGHDAPWKVTYWGLGNEIDGPWQLGHKSAEEYAHFALEAAKAMRSVDRSIKLIASGSSNYGAGADWA
GWNRTVVNTLRDQIDYISLHTYIGNQQNDLERFLGQSQVNIERYIDTTAAIIREAQGGRPNARPIYIAYDEWNVWYRAQN
DKHLEEVYNFEDALAMGMFFNTFFRHADVVKMANLAQMVNVIAPMMTNKQGLFLQPTYFPVAEYSKQRGNIALNTFVSAP
TYKVGPSELPYLDVSTTYNPGSRTLFVNVLNRSKSQDIATRVESQEGALAKSGEVWQMNNADLKATHTFGDDKKVVPTVK
PLTAQVERNGLTYTFPAHSLTILKLKLE

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 57102; Mature: 57102

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTLTILALAVAAHAQAPAARIKIDTDRRIGEVSPLVFGNFAEHLGRMIYGGIYEEGSP
CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
LSDKDGFRTDVMAAVKNLGVSILRYPGGNFASGYNWKDGVGPKDQRPVRPELAWNDIETN
CCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RFGTDEFVEYCRRIGAEPFICINAGLGTIDQAREWVEYANEERHTYWADQRRKNGHDAPW
CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCE
KVTYWGLGNEIDGPWQLGHKSAEEYAHFALEAAKAMRSVDRSIKLIASGSSNYGAGADWA
EEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC
GWNRTVVNTLRDQIDYISLHTYIGNQQNDLERFLGQSQVNIERYIDTTAAIIREAQGGRP
CCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
NARPIYIAYDEWNVWYRAQNDKHLEEVYNFEDALAMGMFFNTFFRHADVVKMANLAQMVN
CCCEEEEEEECCEEEEEECCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAPMMTNKQGLFLQPTYFPVAEYSKQRGNIALNTFVSAPTYKVGPSELPYLDVSTTYNP
HHHHHHCCCCCCEECCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GSRTLFVNVLNRSKSQDIATRVESQEGALAKSGEVWQMNNADLKATHTFGDDKKVVPTVK
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCC
PLTAQVERNGLTYTFPAHSLTILKLKLE
CHHHHHHCCCEEEEECCCCEEEEEEEEC
>Mature Secondary Structure
MKTTLTILALAVAAHAQAPAARIKIDTDRRIGEVSPLVFGNFAEHLGRMIYGGIYEEGSP
CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
LSDKDGFRTDVMAAVKNLGVSILRYPGGNFASGYNWKDGVGPKDQRPVRPELAWNDIETN
CCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RFGTDEFVEYCRRIGAEPFICINAGLGTIDQAREWVEYANEERHTYWADQRRKNGHDAPW
CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCE
KVTYWGLGNEIDGPWQLGHKSAEEYAHFALEAAKAMRSVDRSIKLIASGSSNYGAGADWA
EEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC
GWNRTVVNTLRDQIDYISLHTYIGNQQNDLERFLGQSQVNIERYIDTTAAIIREAQGGRP
CCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
NARPIYIAYDEWNVWYRAQNDKHLEEVYNFEDALAMGMFFNTFFRHADVVKMANLAQMVN
CCCEEEEEEECCEEEEEECCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAPMMTNKQGLFLQPTYFPVAEYSKQRGNIALNTFVSAPTYKVGPSELPYLDVSTTYNP
HHHHHHCCCCCCEECCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GSRTLFVNVLNRSKSQDIATRVESQEGALAKSGEVWQMNNADLKATHTFGDDKKVVPTVK
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCC
PLTAQVERNGLTYTFPAHSLTILKLKLE
CHHHHHHCCCEEEEECCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]