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The map label for this gene is ydhM [C]

Identifier: 116622652

GI number: 116622652

Start: 4497711

End: 4498340

Strand: Reverse

Name: ydhM [C]

Synonym: Acid_3551

Alternate gene names: 116622652

Gene position: 4498340-4497711 (Counterclockwise)

Preceding gene: 116622655

Following gene: 116622651

Centisome position: 45.14

GC content: 65.87

Gene sequence:

>630_bases
ATGGCCGTTCAACCCAAACCCGAAGCGCACGGCACCCGGACCCGCCTGTTGGACGCGGCGCGCTACCTTTTCTGGGAGAA
GGGCTACGCGGCCACCGGCATGGCGGAGTTGCTGGAGCGTGCCCAGGCCAACAGCGGCAGTTTTTACCACTTCTTCGCCA
GTAAGGAGGCGCTGCTGCTGGCGGTGCTGGAGGGCTACCTGGAGGGTCTTGACCCGGTGGTGGTGCAGCCGGCCTTCGCG
CGGCACCGCGACCCCATCGAGCGGATTTTCGGAATCCTGGAAGGCTATCGCGAGCGGCTGCTCTCCACCGAATGCCGCTA
CGGTTGCCCGCTGGGACGCCTTGCATTGGAAATCGAGGCCGAGAACCTGCCCGCACACCAGCTCATCGCACGCAATTTTT
CCGCGTGGACCGGCGCCGTCCGCGGCTGCCTGGAGGCGGCGCGAGATCGCCTGCCGCGCGGCACCGATCTGGACGCGCTC
GCCACCTTCGTCCTCACCGCCATGGAAGGCGGGGTACTGCAGTCGCGATCGCACCGGCGCATCGAGCCCTTCGACCAATC
GGTGGCCCAGTTACGCAAATACTTCGCCTGCCTGCTGGCGGGCGGCAAGAGAAAAGGAGCAAAGAAATGA

Upstream 100 bases:

>100_bases
CGCATGAGGGGGACTGTAACACGGCGAATGGGAACCGATCAAATCGCGCTTGCCTTCACGCCCGGTCCGTGGTTTACTTG
AATGATCAATCAAGTGTTGA

Downstream 100 bases:

>100_bases
AGACACTCGTACTCGGCGTCGCGCTTTGCGCGGCAGCTCTCGCGCAAGACTCCGTGAAAGTTACCCGACTGGATTCGCCG
AAGGCACTCAAGTTCGAGAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAVQPKPEAHGTRTRLLDAARYLFWEKGYAATGMAELLERAQANSGSFYHFFASKEALLLAVLEGYLEGLDPVVVQPAFA
RHRDPIERIFGILEGYRERLLSTECRYGCPLGRLALEIEAENLPAHQLIARNFSAWTGAVRGCLEAARDRLPRGTDLDAL
ATFVLTAMEGGVLQSRSHRRIEPFDQSVAQLRKYFACLLAGGKRKGAKK

Sequences:

>Translated_209_residues
MAVQPKPEAHGTRTRLLDAARYLFWEKGYAATGMAELLERAQANSGSFYHFFASKEALLLAVLEGYLEGLDPVVVQPAFA
RHRDPIERIFGILEGYRERLLSTECRYGCPLGRLALEIEAENLPAHQLIARNFSAWTGAVRGCLEAARDRLPRGTDLDAL
ATFVLTAMEGGVLQSRSHRRIEPFDQSVAQLRKYFACLLAGGKRKGAKK
>Mature_208_residues
AVQPKPEAHGTRTRLLDAARYLFWEKGYAATGMAELLERAQANSGSFYHFFASKEALLLAVLEGYLEGLDPVVVQPAFAR
HRDPIERIFGILEGYRERLLSTECRYGCPLGRLALEIEAENLPAHQLIARNFSAWTGAVRGCLEAARDRLPRGTDLDALA
TFVLTAMEGGVLQSRSHRRIEPFDQSVAQLRKYFACLLAGGKRKGAKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693141, Length=205, Percent_Identity=30.2439024390244, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23249; Mature: 23118

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVQPKPEAHGTRTRLLDAARYLFWEKGYAATGMAELLERAQANSGSFYHFFASKEALLL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
AVLEGYLEGLDPVVVQPAFARHRDPIERIFGILEGYRERLLSTECRYGCPLGRLALEIEA
HHHHHHHHCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
ENLPAHQLIARNFSAWTGAVRGCLEAARDRLPRGTDLDALATFVLTAMEGGVLQSRSHRR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCC
IEPFDQSVAQLRKYFACLLAGGKRKGAKK
CCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AVQPKPEAHGTRTRLLDAARYLFWEKGYAATGMAELLERAQANSGSFYHFFASKEALLL
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
AVLEGYLEGLDPVVVQPAFARHRDPIERIFGILEGYRERLLSTECRYGCPLGRLALEIEA
HHHHHHHHCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
ENLPAHQLIARNFSAWTGAVRGCLEAARDRLPRGTDLDALATFVLTAMEGGVLQSRSHRR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCC
IEPFDQSVAQLRKYFACLLAGGKRKGAKK
CCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339371 [H]