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The map label for this gene is 116622547

Identifier: 116622547

GI number: 116622547

Start: 4356238

End: 4356798

Strand: Reverse

Name: 116622547

Synonym: Acid_3445

Alternate gene names: NA

Gene position: 4356798-4356238 (Counterclockwise)

Preceding gene: 116622549

Following gene: 116622546

Centisome position: 43.72

GC content: 62.21

Gene sequence:

>561_bases
ATGCCGAACCCGTCAATCACGGGATTACTGGACAACTGGAGCCACGGGAACCCCGCCGCACTCGATGAACTTGCGCCTAG
AGTGCAGCAGCAACTCCACACGCTTGCGCGCTCGTACCTGCGCAGATACACGGGCGGCCAGACGCTCCAGCCAACGGCCC
TGATCAATGAGGTCTACCTTCGATTGATCGGCCAGGCAGAACCAATTCAATGGGAAGGGCGCGCGCATTTCTTCGGCATC
GCCGCCCGCCTCATGCGCAACGTACTGGTGGACTACTCCCGTGCGCGCCGTGCATCCAAACGCGGTGGCGGGGCCTTGGC
GATAACGCTGGCGGAAACGGCGGCCCTCTCGCCCACGCACACACCCGACGTTTTGGACGTGGACGAGGCACTCAGCCGGC
TGGCGCGGGTGGACCAGCGAAAAGCGAAGGTCATCGAGTGGCGCTACTTCGGAGGTATGACGGCTGAGGAAATCGCGTGT
GTTTCGCAACTTTCGATTGCGACGGTCAAACGCGATCTGCGCTTCGGCGTCGCGTGGTTGCGGCATGATCTGACAGGCTA
A

Upstream 100 bases:

>100_bases
AATCGGGCGGAAAAAGGATCACGTCATGACGATTTTCTCGTTGCATCGGCAAACGGGTTCGGCTATGTTCATCTAAGCCT
TGGCCGGCGCCGGAGAATAT

Downstream 100 bases:

>100_bases
ATTCCAGCTTGGAGAACGTCGTGGAAACCGAAAGATGGCAACGCGTTGAAGTCCTTTTCCACGAGGCGGCCGACCTCGCG
CACACGGAGCGCGCGGAATT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MPNPSITGLLDNWSHGNPAALDELAPRVQQQLHTLARSYLRRYTGGQTLQPTALINEVYLRLIGQAEPIQWEGRAHFFGI
AARLMRNVLVDYSRARRASKRGGGALAITLAETAALSPTHTPDVLDVDEALSRLARVDQRKAKVIEWRYFGGMTAEEIAC
VSQLSIATVKRDLRFGVAWLRHDLTG

Sequences:

>Translated_186_residues
MPNPSITGLLDNWSHGNPAALDELAPRVQQQLHTLARSYLRRYTGGQTLQPTALINEVYLRLIGQAEPIQWEGRAHFFGI
AARLMRNVLVDYSRARRASKRGGGALAITLAETAALSPTHTPDVLDVDEALSRLARVDQRKAKVIEWRYFGGMTAEEIAC
VSQLSIATVKRDLRFGVAWLRHDLTG
>Mature_185_residues
PNPSITGLLDNWSHGNPAALDELAPRVQQQLHTLARSYLRRYTGGQTLQPTALINEVYLRLIGQAEPIQWEGRAHFFGIA
ARLMRNVLVDYSRARRASKRGGGALAITLAETAALSPTHTPDVLDVDEALSRLARVDQRKAKVIEWRYFGGMTAEEIACV
SQLSIATVKRDLRFGVAWLRHDLTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20671; Mature: 20540

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNPSITGLLDNWSHGNPAALDELAPRVQQQLHTLARSYLRRYTGGQTLQPTALINEVYL
CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RLIGQAEPIQWEGRAHFFGIAARLMRNVLVDYSRARRASKRGGGALAITLAETAALSPTH
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCC
TPDVLDVDEALSRLARVDQRKAKVIEWRYFGGMTAEEIACVSQLSIATVKRDLRFGVAWL
CCCCCCHHHHHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RHDLTG
HHHCCC
>Mature Secondary Structure 
PNPSITGLLDNWSHGNPAALDELAPRVQQQLHTLARSYLRRYTGGQTLQPTALINEVYL
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RLIGQAEPIQWEGRAHFFGIAARLMRNVLVDYSRARRASKRGGGALAITLAETAALSPTH
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCC
TPDVLDVDEALSRLARVDQRKAKVIEWRYFGGMTAEEIACVSQLSIATVKRDLRFGVAWL
CCCCCCHHHHHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RHDLTG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA