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The map label for this gene is 116622540

Identifier: 116622540

GI number: 116622540

Start: 4347228

End: 4348031

Strand: Direct

Name: 116622540

Synonym: Acid_3438

Alternate gene names: NA

Gene position: 4347228-4348031 (Clockwise)

Preceding gene: 116622537

Following gene: 116622541

Centisome position: 43.62

GC content: 58.33

Gene sequence:

>804_bases
ATGGCTGCCATAGTATGGAAGGGATTTATCAGTTTCGGGTTGGTATCGTTCCCGGTGCGGCTTAACGCCGCCGCCCGGCC
GGAGACGATTCACTTTCACATGCTGCATAAGAAGGACGAGTCGCGCGTGAAAGAGGTCTGGTACTGCGCGGACGAGAACA
AACCGATCGACCGTGCCGAGATCGTCAAGGGCTACGAGGTGAGGAAGGGCGAGTATGTGGTGATCGAGGATGAAGATCTG
AAGAAGATCGCGCCGCCAACGGCGACCACAATGGATATTCTGCAATTCGTGAAGAGCGATCAGGTGGACCCTATCTATTT
CGAAAGCTCCTACTACGTCGGCGCGGAAGAGGGTGGGGGCAAGGCCTATGCGCTATTCGTGGCCGCGCTGGATGCGACCA
AAGAGGATGCGATCGCGAAGCTTTCGATGCACAACCGCGAGCATATCGTGCTGATCCGGGCGTCTGACAACGCGCTGGTG
CTGCACACGCTGTATTACCCGAACGAATTGCACAAGGCGAACCGCAGCGAAACACCGAAGACCAAGTACACGGCCAAGGA
ACTGGAACTCGCCCAGAGCCTGGTCAGCCAGCTCACCGCGCCATTCAAGCCGCAGGAGTTTCACGACGAGTACCGCGAGA
ATGTGGAGCATCTGATCGAGCAGAAGCGCAAGGGCGGCAAGATTACGGCCGTGAAGCAGCCGCGCAAGGCGCCCGTGATC
GACCTCATGGAAGCGCTCAAGCGCAGCGTCAAGGCCGCGGAGTCGAAGCGAAAGAAACCTGCAGGCAAGCGCAAGGCCGC
ATAA

Upstream 100 bases:

>100_bases
GAACATTCGGTAATCTCCCTCACCTTAGCCTCTGAAATGCTGCATGATCTGCAGGGCTGATGGTTCAGATGCAATTTCGT
GCCCGAAGGGTTGGGAACTT

Downstream 100 bases:

>100_bases
ATCTCCTGCTACAGCTTTCATCGGACGGTGATAGGGTAAAGCCTATGAACCGTCGAGAGTTCCTCTGCGCCGCGGGTGCG
GCCGGTCTTTTTTGCGGCCC

Product: DNA end-binding protein Ku

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MAAIVWKGFISFGLVSFPVRLNAAARPETIHFHMLHKKDESRVKEVWYCADENKPIDRAEIVKGYEVRKGEYVVIEDEDL
KKIAPPTATTMDILQFVKSDQVDPIYFESSYYVGAEEGGGKAYALFVAALDATKEDAIAKLSMHNREHIVLIRASDNALV
LHTLYYPNELHKANRSETPKTKYTAKELELAQSLVSQLTAPFKPQEFHDEYRENVEHLIEQKRKGGKITAVKQPRKAPVI
DLMEALKRSVKAAESKRKKPAGKRKAA

Sequences:

>Translated_267_residues
MAAIVWKGFISFGLVSFPVRLNAAARPETIHFHMLHKKDESRVKEVWYCADENKPIDRAEIVKGYEVRKGEYVVIEDEDL
KKIAPPTATTMDILQFVKSDQVDPIYFESSYYVGAEEGGGKAYALFVAALDATKEDAIAKLSMHNREHIVLIRASDNALV
LHTLYYPNELHKANRSETPKTKYTAKELELAQSLVSQLTAPFKPQEFHDEYRENVEHLIEQKRKGGKITAVKQPRKAPVI
DLMEALKRSVKAAESKRKKPAGKRKAA
>Mature_266_residues
AAIVWKGFISFGLVSFPVRLNAAARPETIHFHMLHKKDESRVKEVWYCADENKPIDRAEIVKGYEVRKGEYVVIEDEDLK
KIAPPTATTMDILQFVKSDQVDPIYFESSYYVGAEEGGGKAYALFVAALDATKEDAIAKLSMHNREHIVLIRASDNALVL
HTLYYPNELHKANRSETPKTKYTAKELELAQSLVSQLTAPFKPQEFHDEYRENVEHLIEQKRKGGKITAVKQPRKAPVID
LMEALKRSVKAAESKRKKPAGKRKAA

Specific function: Could be involved in DNA repair

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3438_SOLUE (Q021H8)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_824696.1
- ProteinModelPortal:   Q021H8
- STRING:   Q021H8
- GeneID:   4428338
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_3438
- NMPDR:   fig|234267.9.peg.3264
- eggNOG:   COG1273
- HOGENOM:   HBG492008
- OMA:   RYVVISE
- ProtClustDB:   CLSK774809
- HAMAP:   MF_01875
- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194
- PIRSF:   PIRSF006493
- TIGRFAMs:   TIGR02772

Pfam domain/function: PF02735 Ku; SSF100939 SPOC-like

EC number: NA

Molecular weight: Translated: 30236; Mature: 30105

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIVWKGFISFGLVSFPVRLNAAARPETIHFHMLHKKDESRVKEVWYCADENKPIDRAE
CCEEEEHHHHHHHHHHCCEEECCCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCHHH
IVKGYEVRKGEYVVIEDEDLKKIAPPTATTMDILQFVKSDQVDPIYFESSYYVGAEEGGG
HHCCEEECCCCEEEEECCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCC
KAYALFVAALDATKEDAIAKLSMHNREHIVLIRASDNALVLHTLYYPNELHKANRSETPK
EEEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCHHHHHCCCCCCCC
TKYTAKELELAQSLVSQLTAPFKPQEFHDEYRENVEHLIEQKRKGGKITAVKQPRKAPVI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
DLMEALKRSVKAAESKRKKPAGKRKAA
HHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AAIVWKGFISFGLVSFPVRLNAAARPETIHFHMLHKKDESRVKEVWYCADENKPIDRAE
CEEEEHHHHHHHHHHCCEEECCCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCHHH
IVKGYEVRKGEYVVIEDEDLKKIAPPTATTMDILQFVKSDQVDPIYFESSYYVGAEEGGG
HHCCEEECCCCEEEEECCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCC
KAYALFVAALDATKEDAIAKLSMHNREHIVLIRASDNALVLHTLYYPNELHKANRSETPK
EEEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCHHHHHCCCCCCCC
TKYTAKELELAQSLVSQLTAPFKPQEFHDEYRENVEHLIEQKRKGGKITAVKQPRKAPVI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
DLMEALKRSVKAAESKRKKPAGKRKAA
HHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA