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The map label for this gene is rhaB [H]

Identifier: 116622526

GI number: 116622526

Start: 4330492

End: 4331967

Strand: Direct

Name: rhaB [H]

Synonym: Acid_3424

Alternate gene names: 116622526

Gene position: 4330492-4331967 (Clockwise)

Preceding gene: 116622525

Following gene: 116622527

Centisome position: 43.45

GC content: 63.75

Gene sequence:

>1476_bases
GTGCAGCGCTATACTTGCCTTTTCATGAGTTACTATCTGGCAATCGATCTGGGCGCGGAGAGCGGGCGGGCACTTTTAGG
CAGCCTCTCCGGCGGCAAACTCACGGTGGAAGAACTTCACCGTTTTCCGAACACCCCGGTGCGGGTTTCGGTGGCGCTGT
ACTGGGACATACTCCGGCTGTGGCACGAGATTCAGAAGGGCATCGGCGTGGCGACGCGCGAGCGAAAGCTGACGCTGGAC
GGGATCGGGGTGGATACCTGGGGCGTGGATTTCGCGCTGATCGGCGCCGACGGATTGCTGGTGGATATGCCGCGCCACTA
TCGCGACGCGCGCAACAACGGCGTGATGGAACGGCTGTTTGAAGTGGTTCCGCGCGCCGATGTGTTCGAGTACACGGGCG
TGCAGTTCATGCAGATCAACACGCTGGTTCAGTTGTATGCGATGAAGTTGAGCGGCTCTCCGGCGTTGGGGATTGCGCAC
CGGCTTCTGAGTATTCCCGATCTGTTCAACTACTGGCTTACCGGCGTGGCGAGGAGCGAGCGCACGATCGCGAGTACCAC
GGAGTTTTTCAATCCCGAGACTATGACGTGGGCGACCGAGCTCTTGAAGCGGCTGGATATCCCAACGGAGATGCTGGCGG
AACTGGTGGATCCGGGCACGTTCCTGGGCCGGATGACGGACGCGCCGCACACTCCGGTGTACGCGTCGGCGGGGCACGAT
ACGGCGGCGGCGGTGGCGGCGGTGCCGGCGGACGGGGGGACGAACTGGTGTTATATCAGCTCGGGGACCTGGAGTTTGAT
GGGAGTGGAGCTGGATCGTCCGGTGATCAACCAGCACTCGCTGGCGGCGAATTACACCAACGAAGTGGGTGTTGCGCGAA
AGGTGCGATTCCTGAAGAATATCGCGGGACTCTGGCTGTTGCAGGAGTGCCGGCGCGAGTGGATGCTGCAGGGCGCGGAG
TACAGTTACGATGAGCTGGCTAGGATGGCGGCGGAGGCGCGGCCGTTCTCGGCGACGATCGACCCCGACGCGTTCCTGGA
GCCGGGCGGGATGCCGGGGAAGATCGCGCGGCACTGCGCGGAGAGCGGGCAGCTTGCGCCGGGGACGCACGGAGAGTATG
CGCGCTCGATCCTGGAGAGCCTGGCACTGCGGTACCGGCAGGTGCTGGAAGACCTGGAGGCGCTCTCGGGGCGCAAGATC
GAGGTGATTCACATTGTGGGCGGCGGCTCACGCAACGGGCTGTTGAACCAGTTCGTGGCCGATTGCACGGGGCGGCGCGT
GGTGGCGGGGCCGAGTGAGGCGACGGCGATCGGGAACATCCTGGTGCAGGCGATGGGGGCGGGCGAATTGGCGGACCTCG
ACGAAATCCGCGCGGTGGTGCGCAATTCGTTTGAGCTGGTCACGGTGGAACCCAATCCAAGCGAGGAGTGGGAGCTGGCG
TGGGTACGTTATCGGGAGCTTACCCGTAGACAGTAA

Upstream 100 bases:

>100_bases
ACGCGGATAACCCAGGAAGAAACCAAGTACACCGTTTCGGAAGTTCGATTACGTGTCGCGAGATCGCTTGCTGACAGGGC
ATGCTATCTCCTTTTCAAAC

Downstream 100 bases:

>100_bases
GTACTCTTACACATGTTATGGTCTTTTCAGGAGACCTACGTGACGAGGATCTGGATCGGGTTAGTGGTGGCTGCTGCCGG
ATTCGGGCAGGAGACATTCC

Product: carbohydrate kinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MQRYTCLFMSYYLAIDLGAESGRALLGSLSGGKLTVEELHRFPNTPVRVSVALYWDILRLWHEIQKGIGVATRERKLTLD
GIGVDTWGVDFALIGADGLLVDMPRHYRDARNNGVMERLFEVVPRADVFEYTGVQFMQINTLVQLYAMKLSGSPALGIAH
RLLSIPDLFNYWLTGVARSERTIASTTEFFNPETMTWATELLKRLDIPTEMLAELVDPGTFLGRMTDAPHTPVYASAGHD
TAAAVAAVPADGGTNWCYISSGTWSLMGVELDRPVINQHSLAANYTNEVGVARKVRFLKNIAGLWLLQECRREWMLQGAE
YSYDELARMAAEARPFSATIDPDAFLEPGGMPGKIARHCAESGQLAPGTHGEYARSILESLALRYRQVLEDLEALSGRKI
EVIHIVGGGSRNGLLNQFVADCTGRRVVAGPSEATAIGNILVQAMGAGELADLDEIRAVVRNSFELVTVEPNPSEEWELA
WVRYRELTRRQ

Sequences:

>Translated_491_residues
MQRYTCLFMSYYLAIDLGAESGRALLGSLSGGKLTVEELHRFPNTPVRVSVALYWDILRLWHEIQKGIGVATRERKLTLD
GIGVDTWGVDFALIGADGLLVDMPRHYRDARNNGVMERLFEVVPRADVFEYTGVQFMQINTLVQLYAMKLSGSPALGIAH
RLLSIPDLFNYWLTGVARSERTIASTTEFFNPETMTWATELLKRLDIPTEMLAELVDPGTFLGRMTDAPHTPVYASAGHD
TAAAVAAVPADGGTNWCYISSGTWSLMGVELDRPVINQHSLAANYTNEVGVARKVRFLKNIAGLWLLQECRREWMLQGAE
YSYDELARMAAEARPFSATIDPDAFLEPGGMPGKIARHCAESGQLAPGTHGEYARSILESLALRYRQVLEDLEALSGRKI
EVIHIVGGGSRNGLLNQFVADCTGRRVVAGPSEATAIGNILVQAMGAGELADLDEIRAVVRNSFELVTVEPNPSEEWELA
WVRYRELTRRQ
>Mature_491_residues
MQRYTCLFMSYYLAIDLGAESGRALLGSLSGGKLTVEELHRFPNTPVRVSVALYWDILRLWHEIQKGIGVATRERKLTLD
GIGVDTWGVDFALIGADGLLVDMPRHYRDARNNGVMERLFEVVPRADVFEYTGVQFMQINTLVQLYAMKLSGSPALGIAH
RLLSIPDLFNYWLTGVARSERTIASTTEFFNPETMTWATELLKRLDIPTEMLAELVDPGTFLGRMTDAPHTPVYASAGHD
TAAAVAAVPADGGTNWCYISSGTWSLMGVELDRPVINQHSLAANYTNEVGVARKVRFLKNIAGLWLLQECRREWMLQGAE
YSYDELARMAAEARPFSATIDPDAFLEPGGMPGKIARHCAESGQLAPGTHGEYARSILESLALRYRQVLEDLEALSGRKI
EVIHIVGGGSRNGLLNQFVADCTGRRVVAGPSEATAIGNILVQAMGAGELADLDEIRAVVRNSFELVTVEPNPSEEWELA
WVRYRELTRRQ

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=470, Percent_Identity=40.4255319148936, Blast_Score=305, Evalue=3e-84,
Organism=Escherichia coli, GI1789168, Length=412, Percent_Identity=26.9417475728155, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54349; Mature: 54349

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRYTCLFMSYYLAIDLGAESGRALLGSLSGGKLTVEELHRFPNTPVRVSVALYWDILRL
CCCHHHHHHHHHHHEECCCCCCCCCEEECCCCEEEHHHHHHCCCCCEEEEHHHHHHHHHH
WHEIQKGIGVATRERKLTLDGIGVDTWGVDFALIGADGLLVDMPRHYRDARNNGVMERLF
HHHHHHCCCCEECCCEEEEECCCCCCCCCCEEEECCCCEEECCCHHHHHHCCCCHHHHHH
EVVPRADVFEYTGVQFMQINTLVQLYAMKLSGSPALGIAHRLLSIPDLFNYWLTGVARSE
HHCCCCCHHHHCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
RTIASTTEFFNPETMTWATELLKRLDIPTEMLAELVDPGTFLGRMTDAPHTPVYASAGHD
CHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCEEECCCCC
TAAAVAAVPADGGTNWCYISSGTWSLMGVELDRPVINQHSLAANYTNEVGVARKVRFLKN
HHHEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
IAGLWLLQECRREWMLQGAEYSYDELARMAAEARPFSATIDPDAFLEPGGMPGKIARHCA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHH
ESGQLAPGTHGEYARSILESLALRYRQVLEDLEALSGRKIEVIHIVGGGSRNGLLNQFVA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH
DCTGRRVVAGPSEATAIGNILVQAMGAGELADLDEIRAVVRNSFELVTVEPNPSEEWELA
HCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHH
WVRYRELTRRQ
HHHHHHHHCCC
>Mature Secondary Structure
MQRYTCLFMSYYLAIDLGAESGRALLGSLSGGKLTVEELHRFPNTPVRVSVALYWDILRL
CCCHHHHHHHHHHHEECCCCCCCCCEEECCCCEEEHHHHHHCCCCCEEEEHHHHHHHHHH
WHEIQKGIGVATRERKLTLDGIGVDTWGVDFALIGADGLLVDMPRHYRDARNNGVMERLF
HHHHHHCCCCEECCCEEEEECCCCCCCCCCEEEECCCCEEECCCHHHHHHCCCCHHHHHH
EVVPRADVFEYTGVQFMQINTLVQLYAMKLSGSPALGIAHRLLSIPDLFNYWLTGVARSE
HHCCCCCHHHHCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
RTIASTTEFFNPETMTWATELLKRLDIPTEMLAELVDPGTFLGRMTDAPHTPVYASAGHD
CHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCEEECCCCC
TAAAVAAVPADGGTNWCYISSGTWSLMGVELDRPVINQHSLAANYTNEVGVARKVRFLKN
HHHEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
IAGLWLLQECRREWMLQGAEYSYDELARMAAEARPFSATIDPDAFLEPGGMPGKIARHCA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHH
ESGQLAPGTHGEYARSILESLALRYRQVLEDLEALSGRKIEVIHIVGGGSRNGLLNQFVA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH
DCTGRRVVAGPSEATAIGNILVQAMGAGELADLDEIRAVVRNSFELVTVEPNPSEEWELA
HCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHH
WVRYRELTRRQ
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663928 [H]