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The map label for this gene is nifU [H]

Identifier: 116621927

GI number: 116621927

Start: 3562298

End: 3562654

Strand: Direct

Name: nifU [H]

Synonym: Acid_2812

Alternate gene names: 116621927

Gene position: 3562298-3562654 (Clockwise)

Preceding gene: 116621923

Following gene: 116621929

Centisome position: 35.75

GC content: 62.46

Gene sequence:

>357_bases
ATGTACCCGGAACGTCTACTCGACCATTTTCAGAATCCGCGCAATGTCGGCGAACTCCCGTCGCCGGCAATCACAGTGGA
GGTTTCAAACCCGGCGTGCGGGGATATTTTGCGGCTCTCTGCCCTATTCACGGAGGGACGAATTGCCGAGGCGAGTTACA
AGGTGCGCGGTTGCACTGCGTCGATCGCGGCCGGGTCGGCGTTGACGGAATGGCTGGCTGGGAAAACGCGCGACGAGCTG
TCACGGTTCACGGCGACACTCATCGACGAAGCGGTCGGCGGCCTGCCGACTGCGTCTAAGCACGCGGCGGTATTGTGCGC
CGATGGCGTGAAGGCCCTGCGGCGTGCGTTGGATTGA

Upstream 100 bases:

>100_bases
ACCCGCCGCTGCCGCCCTGCGCCGCCATGCATGTTCCACGCCCTCTTGAGTTGGTCTGGGCAGTTTCTGGAAGAATGCGG
CCGGCATCTTAAACATAGAA

Downstream 100 bases:

>100_bases
CCGGCTCCGTTATTCCTCCCGCAGCACCGTGATGGGGTCGATTCTCACGGCGCGGCGGGCGGGGATCCAACACGCCGCGG
CGGCAATCACGGCGAGCAGT

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MYPERLLDHFQNPRNVGELPSPAITVEVSNPACGDILRLSALFTEGRIAEASYKVRGCTASIAAGSALTEWLAGKTRDEL
SRFTATLIDEAVGGLPTASKHAAVLCADGVKALRRALD

Sequences:

>Translated_118_residues
MYPERLLDHFQNPRNVGELPSPAITVEVSNPACGDILRLSALFTEGRIAEASYKVRGCTASIAAGSALTEWLAGKTRDEL
SRFTATLIDEAVGGLPTASKHAAVLCADGVKALRRALD
>Mature_118_residues
MYPERLLDHFQNPRNVGELPSPAITVEVSNPACGDILRLSALFTEGRIAEASYKVRGCTASIAAGSALTEWLAGKTRDEL
SRFTATLIDEAVGGLPTASKHAAVLCADGVKALRRALD

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=116, Percent_Identity=37.9310344827586, Blast_Score=81, Evalue=2e-16,
Organism=Homo sapiens, GI24307953, Length=112, Percent_Identity=38.3928571428571, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788878, Length=115, Percent_Identity=39.1304347826087, Blast_Score=86, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17543474, Length=116, Percent_Identity=38.7931034482759, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6324800, Length=117, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6325122, Length=117, Percent_Identity=34.1880341880342, Blast_Score=70, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21355597, Length=116, Percent_Identity=38.7931034482759, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 12524; Mature: 12524

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPERLLDHFQNPRNVGELPSPAITVEVSNPACGDILRLSALFTEGRIAEASYKVRGCTA
CCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEECCCHH
SIAAGSALTEWLAGKTRDELSRFTATLIDEAVGGLPTASKHAAVLCADGVKALRRALD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHCC
>Mature Secondary Structure
MYPERLLDHFQNPRNVGELPSPAITVEVSNPACGDILRLSALFTEGRIAEASYKVRGCTA
CCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEECCCHH
SIAAGSALTEWLAGKTRDELSRFTATLIDEAVGGLPTASKHAAVLCADGVKALRRALD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]